| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_2018 |
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| Symbol | cobT |
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| ID | 7386841 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 1659670 |
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| End bp | 1660692 |
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| Gene Length | 1023 bp |
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| Protein Length | 340 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 643651249 |
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| Product | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase |
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| Protein accession | YP_002549445 |
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| Protein GI | 222148488 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG2038] NaMN:DMB phosphoribosyltransferase |
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| TIGRFAM ID | [TIGR03160] nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.158688 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAGTGTAA CCGGCCTGCC GTTTGACGAT TTCCGAGTGC TGCTGCGCGA TTTGCCAGGG
CCTGACAGCC AGGCGCTAGT GGCGGCCCGC GACCGCGACC GTCAATTGAC CAAGCCGCCG
GGCTCGCTTG GCCGGTTGGA AGAAATCGCC ATGTGGCTTG CCGCCTGGAG TGGCCGTGCG
CCAGCGGTGA ACCGTCCACT GGTGGCGATC TTTGCTGGCA ATCACGGCGT AGCCAGGCAT
GGTATCACGC CGTTTCCATC TTCCGTCACC CAGCAGATGG TGGAGAATTT CGCAGCCGGT
GGGGCGGCGA TCAACCAGAT CTGCGTTGCC CATGATCTCG GATTGAAGAT TTTCGATCTG
GCGCTGGATT ATCCGACTGG CGATATTACC GTCGAGCCGG CTCTGTCGGA GCGTGATTGT
GCGGCCACCA TGGCCTTCGG CATGGAAGCG ATCGCCGGTG GCACGGATCT GCTGTGCCTT
GGCGAAATGG GGATTGGCAA TACGACCATT GCCGCAGCAA TCAACCTGGC GCTTTACGGC
GGTTCGGCCG AGGACTGGGT CGGGCCTGGC ACCGGCTCGC AAGGCGAAAT GCTGGAGCGC
AAGATTGCTG TGGTCAAGCA GGCGGTTGAG TTTCACCGCG ATCACCTTTC CGATCCGCTG
GAAGTGATGC GCCGTCTGGG AGGACGCGAA ATCGCCGCCA TGGCAGGTGC CATTCTTGCA
GCGCGAATGG AGCGTATTCC GGTGCTGATC GATGGCTATG TGGCGACGGC TGCCGCTGCC
CTGCTGAAAG CTGCTAATCC CTCGGCGCTC GACCATTGCC TGATCGGCCA TGTCTCGGCG
GAGCCGGGGC ATTTGAAGGC GATCGACAAG CTGGGCAAGA CGCCGCTTCT GGCGCTTGGC
ATGCGGCTGG GTGAGGGGAC GGGTGCCGCC CTTGCCGCTG GCATCGTCAA GGCGGCTGCG
GCCTCCCATA CGGGCATGGC GACCTTCGAA CAGGCCGGCG TGACCAATGC TGGCACCCAT
TGA
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| Protein sequence | MSVTGLPFDD FRVLLRDLPG PDSQALVAAR DRDRQLTKPP GSLGRLEEIA MWLAAWSGRA
PAVNRPLVAI FAGNHGVARH GITPFPSSVT QQMVENFAAG GAAINQICVA HDLGLKIFDL
ALDYPTGDIT VEPALSERDC AATMAFGMEA IAGGTDLLCL GEMGIGNTTI AAAINLALYG
GSAEDWVGPG TGSQGEMLER KIAVVKQAVE FHRDHLSDPL EVMRRLGGRE IAAMAGAILA
ARMERIPVLI DGYVATAAAA LLKAANPSAL DHCLIGHVSA EPGHLKAIDK LGKTPLLALG
MRLGEGTGAA LAAGIVKAAA ASHTGMATFE QAGVTNAGTH
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