| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_1970 |
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| Symbol | |
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| ID | 7387256 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 1625195 |
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| End bp | 1626472 |
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| Gene Length | 1278 bp |
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| Protein Length | 425 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 643651219 |
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| Product | major capsid-like protein |
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| Protein accession | YP_002549415 |
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| Protein GI | 222148458 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4653] Predicted phage phi-C31 gp36 major capsid-like protein |
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| TIGRFAM ID | [TIGR01554] phage major capsid protein, HK97 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.244233 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACTATGT CGCAAAGACT GAAAGAATTG CGCGAAAAGC AGGCGCGCCT TGTTACCGAG
GCCCGCGAAC GGCTGGAGGC GATTACGCCT GACACCGATG AGGTTCGGTC CAAGGAACTG
GAAAGCGCTC ATGATACGGC GATGGCCGAA TATGATCGGC TGCAAGGTAT CCTCGACCGG
GAAGAAAAAC TGATCGAGCT GGAAAAGCGC GATGAAGAGC GCCGCGCCAA ACAGCGCCCG
TTGCGCGATA CCCCGGAAAT GCGTGGCGAC GATCTACCCC AGGGTGGCAA GGTCGAATAT
CGCAGCGTGT TTGCCAAGGT GGTCTGCGGT GTCAGTCCGT CCGATCTGAC CAAGGAAGAG
CGCGCGGTGC TGCAGCGTGG CGCTGCCTCG TTTGAGAGCC GCGATCAGGT GACAACCAGT
GCCGTTGCGG GTGGCTATAC CGTGCCGGTC GAGCTGGAAG CCACGATCAT CCAGGCGATG
AAAGCCTGGG GGCCGCTTTA TGACGAAAAC ATCTGCACAG TGATCACCAC GTCGAAGGGC
AACGAAATGC TGGTGCCGAC CGTTGACGAT ACCGACAACG AGGCCGATCC CCTGGCCGAG
GCGGCCGATC TCCTGGAAGA TGGCAGCGGC GATGTCGAGT TCGGGCAAAA GGTGCTGAAC
GCCTATGTCT ATGCCACGCC GTTCATCAAG TGGTCCTTCG AGCTGGATGC GGATTCGCTG
TTCAACATGG AATCGCTGCT CGGCGGCATG ATCGGTGAGC GCCTCGGTCG GATCGGGAAC
CGCAAGCTGA CATCGGGAAC CGGCCAAAAC CAGCCGAACG GCGTGGTGAA TGCGGCGGGC
CTCGGCGTGA CCACGGCGGC CAAGGATGCC TTCACCTTCG ACAACATCCT CGAACTGGAG
CATTCCATTG ATCCTGCTTA TCGTGGCTCG CCCAAATGCC GGTACATGTT CCATGACAAG
TTCCTGCTGG CCACCCGCAA ACTGAAGGAT GGCAACGGCA ATTACCTTTG GCAGCAGGGG
GATGTGCAGA AGGGAACACC GGCCAGCTTC AACGGTCGCG CCTATTCGAT CAATCAGCAC
ATGGATGAAG TGACGGCCGA CAAGCGGATC GCGCTGTTTG GCGACTTCTC CAAATACTAC
GTCCGCAAGG TCGGGTCGCC CGTCATCGGC GTGCTGCGCG AACGCTTCTG GCCGAAGGTC
GGCATTGCCG GCCTGATCCG CTTCGACGGC GAGCTGGGCG ATGCCAACGC CATCAAGGCC
ATGAAGACGG CGGCCTGA
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| Protein sequence | MTMSQRLKEL REKQARLVTE ARERLEAITP DTDEVRSKEL ESAHDTAMAE YDRLQGILDR
EEKLIELEKR DEERRAKQRP LRDTPEMRGD DLPQGGKVEY RSVFAKVVCG VSPSDLTKEE
RAVLQRGAAS FESRDQVTTS AVAGGYTVPV ELEATIIQAM KAWGPLYDEN ICTVITTSKG
NEMLVPTVDD TDNEADPLAE AADLLEDGSG DVEFGQKVLN AYVYATPFIK WSFELDADSL
FNMESLLGGM IGERLGRIGN RKLTSGTGQN QPNGVVNAAG LGVTTAAKDA FTFDNILELE
HSIDPAYRGS PKCRYMFHDK FLLATRKLKD GNGNYLWQQG DVQKGTPASF NGRAYSINQH
MDEVTADKRI ALFGDFSKYY VRKVGSPVIG VLRERFWPKV GIAGLIRFDG ELGDANAIKA
MKTAA
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