| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_1889 |
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| Symbol | avsI |
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| ID | 7387201 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 1563426 |
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| End bp | 1564070 |
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| Gene Length | 645 bp |
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| Protein Length | 214 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 643651163 |
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| Product | autoinducer synthesis protein |
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| Protein accession | YP_002549360 |
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| Protein GI | 222148403 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG3916] N-acyl-L-homoserine lactone synthetase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.889914 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGCTCAAAA TTCTGAACAG CCGACATAAG CAGACGCAAC AGGCGGCATT GGCAGACATG
TTTCGCCTGC GAAAAAAAGT ATTTCATGAT CTTTTGAAAT GGGATGTCGT TGTACAGGGC
GATTTCGAGA TGGATCACTA TGATGATGCC AATCCGATTT ACGTTTTATC TTATGACGAC
AGGACAGGCC GGTTGCGCGG CTCGCTCCGC CTGCTGCCGA CGCTTGGCCC GAATATGCTG
GATGATACCT TTCCCATTCT ATTGGACGGA AAGCCGGCCA TTCGTGACAT TGCCATGTGG
GAATCGAGCC GGTTCTGCAT CGACCCGGAA ATTTCCCTGG ACCGATCTTC CAACCAGGTC
AGCATTGCCG CAGCCGAGCT GATGTGTGGT GTTGGTGAAC TGGCCCTTGC ATCGGGGCTT
ACGCATATCG TCACCGTGAC AGATGTGTTT TTGGAGCGGA TGTTTCGCCG CATGGGCTGC
CCCGGCGAAC GAATTGGCGC GCCGCATAAG ATCGGCTCGG TTCATGCCGT GGCAATTGCC
TGGGAGATCG ATACCGGCAT GCTCGATGCC ATGAAAAACA TTGCTGCCAT CACCGGACGC
CTGCTCGACA CACCCATGTC GCTGGAACAG GCACGCGCCG CCTGA
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| Protein sequence | MLKILNSRHK QTQQAALADM FRLRKKVFHD LLKWDVVVQG DFEMDHYDDA NPIYVLSYDD
RTGRLRGSLR LLPTLGPNML DDTFPILLDG KPAIRDIAMW ESSRFCIDPE ISLDRSSNQV
SIAAAELMCG VGELALASGL THIVTVTDVF LERMFRRMGC PGERIGAPHK IGSVHAVAIA
WEIDTGMLDA MKNIAAITGR LLDTPMSLEQ ARAA
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