| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_1846 |
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| Symbol | rpsC |
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| ID | 7386808 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 1535982 |
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| End bp | 1536662 |
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| Gene Length | 681 bp |
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| Protein Length | 226 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 643651132 |
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| Product | 30S ribosomal protein S3 |
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| Protein accession | YP_002549329 |
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| Protein GI | 222148372 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0092] Ribosomal protein S3 |
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| TIGRFAM ID | [TIGR01009] ribosomal protein S3, bacterial type |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.00843492 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | CTGGGCATTA ACAGGACCTG GGATAGCCGT TGGTTCGCCG ACAACGCTGA ATATGGCAAG
CTTCTTCATG AAGACCTGAA GATCCGCGCC TATTTGATGG ATGAGCTGAA GCAGGCCGGT
ATCGCCAAGG TGGTTATCGA GCGTCCGCAC AAGAAGTGCC GCGTCACGAT CCACTCGGCG
CGTCCGGGCC TGATCATCGG CAAGAAGGGT GCAGACATCG AAAAGCTTCG CAAGAAGCTT
TCCGAGATGA CCAATTCCGA AACGCACCTC AACATTGTTG AAGTGCGCAA GCCGGAAGTC
GATGCAACGC TGGTCGCTCA ATCGATCGCC CAGCAGCTCG AGCGCCGTAT CGCGTTCCGT
CGTGCGATGA AGCGCGCCGT ACAGTCCGCC ATGCGTCTGG GTGCCGAAGG CATCAAGATC
ACCTGCGCTG GCCGTCTCGG TGGTGCCGAA ATCGCTCGTA CGGAATGGTA CCGCGAAGGT
CGCGTGCCGC TTCATACGCT GCGTGCCGAT ATCGATTACG GTGTAGCGGA AGCTACAACC
GCTTATGGTA TTTGCGGCAT CAAGGTCTGG ATCTTCAAGG GCGAAATCCT TGAGCATGAT
CCAATGGCCT CCGAGCGCCG GGCGCTGGAA AGCGACGCCC AAGGCGGCAA CAACAACAAC
CGTCGTCGCG AGAACGCCTG A
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| Protein sequence | MGINRTWDSR WFADNAEYGK LLHEDLKIRA YLMDELKQAG IAKVVIERPH KKCRVTIHSA
RPGLIIGKKG ADIEKLRKKL SEMTNSETHL NIVEVRKPEV DATLVAQSIA QQLERRIAFR
RAMKRAVQSA MRLGAEGIKI TCAGRLGGAE IARTEWYREG RVPLHTLRAD IDYGVAEATT
AYGICGIKVW IFKGEILEHD PMASERRALE SDAQGGNNNN RRRENA
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