| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_1826 |
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| Symbol | rpoB |
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| ID | 7386793 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 1517641 |
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| End bp | 1521780 |
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| Gene Length | 4140 bp |
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| Protein Length | 1379 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 643651117 |
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| Product | DNA-directed RNA polymerase subunit beta |
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| Protein accession | YP_002549314 |
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| Protein GI | 222148357 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.365414 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCTCAGA CCCTTTCCTT TAACGGTCGC AGGCGCGTAC GCAAGTTTTT CGGAAAAATT
CCAGAAGTCG CAGAAATGCC GAACCTCATC GAGGTTCAGA AGGCATCCTA CGATCAGTTC
CTCATGGTTG ACGAGCCCGA AGGTGGTCGT CCCGACGAGG GACTTCAAAC CGTTTTCAAG
TCCGTCTTCC CGATCACCGA TTTTTCCGGT GCCTCGATGT TGGAATTCGT GTCCTACGAA
TTCGAGCCGC CGAAGTTCGA CGTCGATGAA TGCCGCCAGC GCGACCTGAC CTATGCGGCA
CCGCTCAAGG TGACGCTGCG CCTGATCGTG TTCGATATTG ATGAAGATAC GGGCGCCCGC
TCGATCAAGG ACATCAAGGA ACAGTCGGTC TACATGGGCG ACATGCCTTT GATGACCAAT
AACGGCACGT TTATCGTCAA CGGCACCGAG CGCGTTATCG TGTCGCAGAT GCACCGTTCG
CCGGGCGTGT TCTTCGACCA CGACAAGGGT AAGAGCCATT CCTCCGGCAA GCTGCTGTTT
GCCGCTCGCG TCATTCCTTA CCGCGGTTCC TGGCTCGATA TTGAATTCGA CGCCAAGGAC
ATTGTCCACG CTCGTATCGA CCGCCGCCGC AAGATCCCCG TGACCTCGCT GCTGATGGCG
CTGGGTATGG ACGGCGAAGA GATCCTTTCG ACCTTCTACT CCAAGTCCGA CTACAAGCGG
GATGGCAAGG GCTGGCGCGT GCCGTTCCAG GCGGAAACGC TGAAGGGCTC CAAGACGCTC
GTCGATATGG TCGATGCCGA TAGCGGCGAA GTCGTTGTCG AAGCCGGCAA GAAGCTCACC
CCGCGTCTTC TGCGCCAGTT GCAGGACAAG GGTCTGAAAG CGCTGAAGGC GACTGACGAG
GACCTCTACG GAAATTATCT GGCAGAAGAT ATCGTCAATT TCGCAACCGG GGAGATCTAT
CTCGAAGCCG GTGACGAAAT TGACGAAAAG ACCCTGCCAA TCATTCTTGA TGCGGGCTTT
GAAGAGATCC CGGTTCTGGG CATCGATCAT ATCAATGTCG GCGCCTATAT CCGCAACACG
CTGGCTGCCG ATAAGAATGA AAACCGCCAG GATGCGCTGT TCGACATCTA CCGCGTCATG
CGTCCGGGTG AGCCGCCAAC CATGGATTCG GCAGAAGCCA TGTTCAACTC GCTGTTCTTC
GATAGCGAGC GCTATGACCT TTCGGCTGTT GGCCGCGTCA AGATGAACAT GCGTCTCGAT
CTCGAAGTGG CCGACACCGT GCGCGTTCTG CGCAAGGAAG ACATCCTGGC TGTGGTCAAG
ATGCTTGTCG AGTTGCGCGA CGGCAAGGGC GAAATCGACG ATATCGACAA CCTTGGCAAC
CGCCGTGTTC GTTCCGTTGG TGAATTGATG GAGAACCAGT ATCGCCTGGG TCTTCTGCGC
ATGGAGCGCG CCATCAAGGA ACGCATGTCG TCGATCGAAA TCGATACTGT CATGCCGCAG
GATCTGATCA ACGCCAAGCC TGCCGCTGCT GCTGTGCGCG AGTTTTTCGG CTCGTCCCAG
CTCAGCCAGT TCATGGACCA GGTCAACCCG CTGTCGGAAA TCACCCACAA GCGCCGTCTT
TCGGCTCTTG GACCGGGTGG TCTGACCCGC GAGCGCGCCG GCTTTGAAGT GCGCGACGTG
CATCCGACCC ATTACGGCCG TATCTGCCCG ATTGAGACGC CTGAAGGCCC GAATATTGGT
CTGATCAACT CGCTTGCCAC GTTCGCCCGT GTCAACAAAT ACGGCTTCAT CGAAAGCCCG
TATCGTAAGA TCATCGACGG CGTGGTGACC AAGGACGTGA TCTACCTCTC CGCCATGGAA
GAGGCCAAGT ATTACGTTGC CCAGGCCAAT GCCGAGCTGA ACGCTGAAGG CAAATTCGTC
GAGGAATTCG TCGTTTGCCG TCATGCTGGG GAAGTGATGC TGTCGCCGCG CGACACCATC
AACCTGATGG ACGTTTCGCC GAAGCAGCTC GTGTCTGTTG CCGCCGCTCT TATTCCGTTC
CTGGAAAACG ACGACGCCAA CCGCGCGCTG ATGGGCTCAA ACATGCAGCG TCAGGCTGTG
CCTCTGCTGC GCGCGGAAGC CCCGTTTGTC GGCACTGGCA TGGAGCCGAT CGTGGCGCGT
GACTCCGGTG CGGCTATCGG CGCCCGTCGT GGCGGCGTGG TCGACCAGGT GGATGCGACG
CGTATCGTTA TCCGCGCAAC GGAAGATCTC GATGCCGGCA AGTCCGGTGT TGATATCTAC
CGCCTGCAGA AGTTCCAGCG TTCCAACCAG AATACCTGCG TCAACCAGCG TCCACTGGTC
GCCGTCGGCG ATATTCTGAA CAAGGGCGAT ATCATCGCGG ACGGTCCGTC GACCGACCTC
GGCGACCTCG CGCTTGGCCG TAACGCGCTT GTCGCGTTCA TGCCTTGGAA CGGCTACAAC
TATGAGGACT CGATCCTCAT GTCGGAGCGT ATCGTTTCGG AAGATGTCTT CACCTCGATC
CATATCGAGG AATTTGAAGT CATGGCCCGC GATACCAAGC TTGGGCCGGA AGAAATCACC
CGCGATATTC CGAACGTCTC GGAAGAAGCG CTTCGCAACC TCGATGAAGC CGGTATCGTC
TACATCGGTG CGGAAGTGCA GCCGGGCGAT ATCCTGGTCG GCAAGATCAC TCCGAAGGGC
GAGAGCCCGA TGACGCCGGA AGAAAAGCTT CTGCGCGCCA TCTTCGGTGA AAAGGCCTCT
GACGTTCGCG ATACCTCGAT GCGTATGCCT CCGGGCACGT TCGGGACCAT TGTCGAAGTT
CGTGTTTTCA ACCGCCACGG CGTTGAAAAG GACGAACGCG CCATGGCCAT CGAGCGCGAA
GAAATCGAAC GTCTCGCCAA GGACCGTGAT GACGAACAGG CAATCCTGGA CCGCAACGTC
TATGGTCGTT TGCTCGACAC GCTGCGCGGT CAGGTTTCGA TTGCCGGTCC GAAGGGTTTC
AAGAAGGGCG TCGAACTCAA CAACGCCGTC ATTTCTGAAT ATCCCCGTTC GCAATGGTGG
ATGTTTGCCG TTGAAGACGA GAAGGTTCAA AGCGAGCTGG AAGCGCTTCG TGGTCAGTAC
GACGAATCCA AGTCGCGCCT TGAGCAGCGC TTCATGGACA AGGTCGAAAA GGTCCAGCGC
GGCGATGAAA TGCCTCCGGG CGTCATGAAG ATGGTCAAGG TCTTTGTTGC TGTGAAGCGC
AAGATCCAGC CAGGCGACAA GATGGCCGGC CGTCACGGCA ACAAGGGCGT CGTGTCGCGC
ATCGTTCCGG TCGAGGACAT GCCGTTCCTC GAAGACGGTA CGCATGTTGA TATCGTTCTG
AACCCGCTGG GCGTGCCGTC GCGTATGAAT GTCGGCCAGA TTCTTGAAAC CCACCTTGCC
TGGGCTTGCG CCGGCATGGG TCGCAAGATT GGACAGATGC TTGAGGATTA CCAGAAGCAT
CTCGACATCA CCGAGCTCAG GACCGAACTG GTCGATCTCT ACGCCAGTGA GTCGCATGAC
GAAGTCGCCA GATTCGACGA CGAATCGCTC CTGCGATTGG CTGATCAGGC CAAGAGTGGA
CTTTCCATCG CCACGCCGGT TTTCGACGGT GCGCATGAAA GCGACGTTTC GGAAATGTTG
ACCCGCGCCG GTTTGCACAC GTCGGGCCAG TCGGTTCTCT ATGATGGACG GACGGGTGAA
ACCTTCGACC GTAAGGTCAC CGTTGGTTAC ATGTACATGA TCAAGCTCAA TCACTTGGTT
GACGACAAGA TCCATGCACG CTCCATCGGC CCTTACTCGC TCGTCACCCA GCAGCCTTTG
GGCGGCAAGG CACAGTTCGG CGGTCAGCGT TTCGGGGAAA TGGAAGTATG GGCTCTGGAA
GCTTACGGCG CTGCCTACAC CCTACAGGAA ATGCTGACGG TGAAGTCGGA CGACGTGGCC
GGACGTACTA AAGTCTACGA AGCCATCGTG CGGGGCGACG ACACGTTCGA AGCCGGTATT
CCAGAGAGCT TCAACGTTCT CGTCAAGGAA ATGCGGTCGC TTGGTCTGTC GGTCGAGTTG
GAGAATTCTA AACTCGAGAC GGCCGATACC GTCAACCCGT TGCCGGACGC TGCGGAATAA
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| Protein sequence | MAQTLSFNGR RRVRKFFGKI PEVAEMPNLI EVQKASYDQF LMVDEPEGGR PDEGLQTVFK
SVFPITDFSG ASMLEFVSYE FEPPKFDVDE CRQRDLTYAA PLKVTLRLIV FDIDEDTGAR
SIKDIKEQSV YMGDMPLMTN NGTFIVNGTE RVIVSQMHRS PGVFFDHDKG KSHSSGKLLF
AARVIPYRGS WLDIEFDAKD IVHARIDRRR KIPVTSLLMA LGMDGEEILS TFYSKSDYKR
DGKGWRVPFQ AETLKGSKTL VDMVDADSGE VVVEAGKKLT PRLLRQLQDK GLKALKATDE
DLYGNYLAED IVNFATGEIY LEAGDEIDEK TLPIILDAGF EEIPVLGIDH INVGAYIRNT
LAADKNENRQ DALFDIYRVM RPGEPPTMDS AEAMFNSLFF DSERYDLSAV GRVKMNMRLD
LEVADTVRVL RKEDILAVVK MLVELRDGKG EIDDIDNLGN RRVRSVGELM ENQYRLGLLR
MERAIKERMS SIEIDTVMPQ DLINAKPAAA AVREFFGSSQ LSQFMDQVNP LSEITHKRRL
SALGPGGLTR ERAGFEVRDV HPTHYGRICP IETPEGPNIG LINSLATFAR VNKYGFIESP
YRKIIDGVVT KDVIYLSAME EAKYYVAQAN AELNAEGKFV EEFVVCRHAG EVMLSPRDTI
NLMDVSPKQL VSVAAALIPF LENDDANRAL MGSNMQRQAV PLLRAEAPFV GTGMEPIVAR
DSGAAIGARR GGVVDQVDAT RIVIRATEDL DAGKSGVDIY RLQKFQRSNQ NTCVNQRPLV
AVGDILNKGD IIADGPSTDL GDLALGRNAL VAFMPWNGYN YEDSILMSER IVSEDVFTSI
HIEEFEVMAR DTKLGPEEIT RDIPNVSEEA LRNLDEAGIV YIGAEVQPGD ILVGKITPKG
ESPMTPEEKL LRAIFGEKAS DVRDTSMRMP PGTFGTIVEV RVFNRHGVEK DERAMAIERE
EIERLAKDRD DEQAILDRNV YGRLLDTLRG QVSIAGPKGF KKGVELNNAV ISEYPRSQWW
MFAVEDEKVQ SELEALRGQY DESKSRLEQR FMDKVEKVQR GDEMPPGVMK MVKVFVAVKR
KIQPGDKMAG RHGNKGVVSR IVPVEDMPFL EDGTHVDIVL NPLGVPSRMN VGQILETHLA
WACAGMGRKI GQMLEDYQKH LDITELRTEL VDLYASESHD EVARFDDESL LRLADQAKSG
LSIATPVFDG AHESDVSEML TRAGLHTSGQ SVLYDGRTGE TFDRKVTVGY MYMIKLNHLV
DDKIHARSIG PYSLVTQQPL GGKAQFGGQR FGEMEVWALE AYGAAYTLQE MLTVKSDDVA
GRTKVYEAIV RGDDTFEAGI PESFNVLVKE MRSLGLSVEL ENSKLETADT VNPLPDAAE
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