| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_1820 |
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| Symbol | rplA |
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| ID | 7386790 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 1515387 |
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| End bp | 1516082 |
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| Gene Length | 696 bp |
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| Protein Length | 231 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 643651114 |
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| Product | 50S ribosomal protein L1 |
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| Protein accession | YP_002549311 |
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| Protein GI | 222148354 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0081] Ribosomal protein L1 |
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| TIGRFAM ID | [TIGR01169] ribosomal protein L1, bacterial/chloroplast |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.186672 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGCAAAGC TTGCAAAGCG TATTCAGAAG ATCCGCGAAG GCGTTGATCC CACCAAGCTG
GTTGCTCTGT CCGACGCCAT TTCGATGGTC AAGGAACGTG CCGTTGCTAA GTTCGATGAA
ACCATCGAAA TCGCCATGAA CCTGGGCGTT GACCCACGTC ACGCCGACCA GATGGTCCGT
GGCGTTGTCA ACCTGCCGAA CGGCACTGGT CGCGACGTTC GCGTTGCCGT CTTCGCGCGT
GGCGCCAAGG CTGATGAAGC CCGTGCAGCT GGCGCTGAAG TTGTTGGCGC CGAAGACCTG
GTCGAAATCG TCCAGGGTGG CAAGATCGAC TTCGACCGTT GCATCGCAAC GCCTGACATG
ATGCCGCTGG TCGGCCGTCT CGGCAAGGTT CTCGGCCCGC GTGGCATGAT GCCGAACCCG
AAGGTTGGTA CGGTGACCAT GGACGTTGCT GGCGCTGTTA AGGCATCCAA GGGCGGCGCT
GTCGAGTTCC GCGTTGAAAA GGCTGGTATC ATCCATGCCG GTATCGGCAA GGCCTCGTTC
GAAGCCAAGG CTCTTGAAGA AAACATCAAG GCTTTCGCTG ACGCCGTCAT CAAGGCAAAG
CCTGCTGGCG CCAAGGGTAA CTACGTCAAG CGCGTAGCGA TCTCCTCGAC CATGGGTCCT
GGCGTCAAGA TCGACCCTTC GTCGGTCACA GCTTAA
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| Protein sequence | MAKLAKRIQK IREGVDPTKL VALSDAISMV KERAVAKFDE TIEIAMNLGV DPRHADQMVR
GVVNLPNGTG RDVRVAVFAR GAKADEARAA GAEVVGAEDL VEIVQGGKID FDRCIATPDM
MPLVGRLGKV LGPRGMMPNP KVGTVTMDVA GAVKASKGGA VEFRVEKAGI IHAGIGKASF
EAKALEENIK AFADAVIKAK PAGAKGNYVK RVAISSTMGP GVKIDPSSVT A
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