| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_1797 |
|---|
| Symbol | mrcA |
|---|
| ID | 7386776 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | + |
|---|
| Start bp | 1501128 |
|---|
| End bp | 1503584 |
|---|
| Gene Length | 2457 bp |
|---|
| Protein Length | 818 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 643651096 |
|---|
| Product | penicillin-binding protein 1a |
|---|
| Protein accession | YP_002549297 |
|---|
| Protein GI | 222148340 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG5009] Membrane carboxypeptidase/penicillin-binding protein |
|---|
| TIGRFAM ID | [TIGR02074] penicillin-binding protein, 1A family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATAAGAC TGATTGGATA TCTCTTCGGA TTGGCTTCCG TTGCCGCGCT TGCCGCGGCA
GCCGCTGCTG CCATCTATCT GACGACCATT ACCAAGGATC TACCTGATTA CGAGGTATTG
AGCCGGTATG CGCCGCCGGT GATGACCCGC GTCCATGCCG GTAACGGCGC GCTGATTGCC
GAATATGCCC ATGAACGGCG GCTGTTCATG CCGATCCAGG CCATTCCAGA TCGTGTGAAG
GCGGCTTTCT TGTCGGCGGA AGACAAGAAT TTCTACACCC ATCCCGGTGT TGATATCTGG
GGCCTTGGCC GCGCCATCCT GGTGAACTTG CAGAATTTCG GCTCCGGTCG CCGTCCCGTC
GGCGCTTCGA CCATCACCCA GCAGGTCGCC AAGAACTTTC TTCTGTCGTC CGACCAGACC
ATGGACCGCA AGATCAAGGA AGCCATTCTC TCCTTCCGCA TCGAGCAGGC CTATTCCAAG
GACAAGATCC TTGAGCTTTA TCTGAACGAG ATTTTCTTTG GCCTGAATTC CTATGGTATC
GCTGCGGCGG CACTCACCTA TTTCGACAAG CCGGTCACCG AACTGACCAT TGCCGAAACC
GCTTATCTTG CTTCTCTGCC TAAAGGCCCG GCCAACTACC ATCCCTACCG TCATACCCAG
GCTGCTATCG AGCGCCGCAA TTGGGTTATC GACCGGCTGG TGGAGAACGG CTTCGTCAGC
CAGGCCGATG GCGACACTGC TAAAAAGGAA GACCTGGGCG TCAACCTGCG GCGCGGTGGT
GGCAATGTCT TTGCCTCGGA TTATTTCTCC GAAGAAGTGC GCCGTCAGAT TATCGATAAA
TACGGCACCA AGTCCCTTTA TGAAGGCGGG CTTTCTGTGC GCACCTCGCT CGATCCAGAG
CTACAAGTCG CCGCCCGCAA GGCGCTTCAG GATGGTTTGC TGAGCTATGA CGAACGGCGT
GGCTATCGCG GTCCGATCAC CCATATAGAC ATGGGGTCCG ACTGGGGCGT GCCGCTGGCC
GATGTGGCTA GCCTTGCCGA CGTGCCGGAA TGGGAAGTCG CGGTCGTGCT CTCTACTTCC
AAGACCGAGG TGCAGATCGG TCTGAAACCG GATCGTGACG GCGCGGGCAA AGTCGTGCCG
GAGCGTCTGA CAGGCACCAT CAAGGCCGAT GCCATGGACT GGGCCTATCG GTCGGGACGT
GGCGACCGCA AAACCGCCAA ATCGCCTGAC GGTGTCTTGC AGCCCGGTGA CGTGGTCTAT
GCTGAAAAGA TCGGCGCCGA TACCTCCACC AATTATCGCC TTCGGCAGCC GCCGAAAGTC
CAGGGCGGTT TCGTTGCCAT GGACCCGCAT ACAGGTCGCG TTTTGGCGCT GGTTGGCGGC
TTCTCCTACG CCCAATCGGA ATTCAACCGT GCGACACAGG CCATGCGTCA GCCGGGTTCG
TCCTTCAAAC CCTTCGTCTA TGCGGCGGCG CTGGATAGCG GCTATACGCC TGCTTCCGTG
GTGCTGGATG CGCCGGTGGA ATTTGTCTCC GGCGGCGAGG TCTGGCGGCC ACAGAACGAT
GGCGGCGGCT CCATCGGCCC GGCAACGCTG CGGTTTGCCA TCGAGCATTC ACGCAACCTG
ATGACGGTGC GTCTGGCCAA TGACATGGGC ATGAATCTCG TGGCCGAATA TGCCGAGCGC
TTCGGCATTT ACGACCATAT GCAGCCCGTG TTGTCGATGT CGCTCGGGGC AGGGGAAACC
ACCGTCATGC GCATGGTCTC GGCCTATGCG GTGATCGCCA ATGGCGGCAA GCAGATCAAG
CCGACGCTGA TCGACCGGAT CCAGGATCGC TACGGCAAGA CGATCTTCAA GCATGAAGAG
CGGATTTGCG AAGGCTGCAA TGCCGACGAA TGGCATAATC AGGATGAGCC TGTTCTGGCC
GATAACCGGT TGCAGGTGCT TGATCCGATG ACCTCCTATC AGATCACCTC AATGATGCAG
GGTGTTATTC AGCGCGGCAC GGCCTATGGC AAGATCAAGC TGGACCGCGA CGTGGCGGGC
AAGACCGGCA CCACCAACGA CGCGAAGGAT ACCTGGTTCG TCGGCTTCAC CCCGAATATC
GTCGCCGGTG TTTATATCGG TTACGACAAT CCGACCCCGA TGGGCCGGGG CGCGACGGGG
GGCTCGATGT CAGCACCTGT ATTTAATGAA TTCATGCAGA CCGCAGTGAA GGGCACACCG
CCCAGCAAGT TCAAGGTGCC TGACGGTATG CAGATGATTG CCGTCAACCG CAAGACCGGC
ATGGCGGCGG TCGTGGGCGA TCCAGATACG ATTGTCGAGG CTTTCAAGCC CGGAACCGGC
CCGGCCGACA GCCTCTCGGT GATCGGCATG GACAGCAATA TGCAGCCGGA TGAGATCATG
AAAAGCTCGC CGCAGGTCAA CCAGGCCGTT CAGTCCGGGA CGCCCGGCCT GTTTTAA
|
|---|
| Protein sequence | MIRLIGYLFG LASVAALAAA AAAAIYLTTI TKDLPDYEVL SRYAPPVMTR VHAGNGALIA
EYAHERRLFM PIQAIPDRVK AAFLSAEDKN FYTHPGVDIW GLGRAILVNL QNFGSGRRPV
GASTITQQVA KNFLLSSDQT MDRKIKEAIL SFRIEQAYSK DKILELYLNE IFFGLNSYGI
AAAALTYFDK PVTELTIAET AYLASLPKGP ANYHPYRHTQ AAIERRNWVI DRLVENGFVS
QADGDTAKKE DLGVNLRRGG GNVFASDYFS EEVRRQIIDK YGTKSLYEGG LSVRTSLDPE
LQVAARKALQ DGLLSYDERR GYRGPITHID MGSDWGVPLA DVASLADVPE WEVAVVLSTS
KTEVQIGLKP DRDGAGKVVP ERLTGTIKAD AMDWAYRSGR GDRKTAKSPD GVLQPGDVVY
AEKIGADTST NYRLRQPPKV QGGFVAMDPH TGRVLALVGG FSYAQSEFNR ATQAMRQPGS
SFKPFVYAAA LDSGYTPASV VLDAPVEFVS GGEVWRPQND GGGSIGPATL RFAIEHSRNL
MTVRLANDMG MNLVAEYAER FGIYDHMQPV LSMSLGAGET TVMRMVSAYA VIANGGKQIK
PTLIDRIQDR YGKTIFKHEE RICEGCNADE WHNQDEPVLA DNRLQVLDPM TSYQITSMMQ
GVIQRGTAYG KIKLDRDVAG KTGTTNDAKD TWFVGFTPNI VAGVYIGYDN PTPMGRGATG
GSMSAPVFNE FMQTAVKGTP PSKFKVPDGM QMIAVNRKTG MAAVVGDPDT IVEAFKPGTG
PADSLSVIGM DSNMQPDEIM KSSPQVNQAV QSGTPGLF
|
|---|
| |