| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_1794 |
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| Symbol | rne |
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| ID | 7386774 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 1495734 |
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| End bp | 1498841 |
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| Gene Length | 3108 bp |
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| Protein Length | 1035 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 643651094 |
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| Product | ribonuclease E |
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| Protein accession | YP_002549295 |
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| Protein GI | 222148338 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1530] Ribonucleases G and E |
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| TIGRFAM ID | [TIGR00757] ribonuclease, Rne/Rng family |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.713418 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCAGACA AAATGCTAAT CGATGCGTCT CACGAAGAAG AGACGCGCGT CGTTGTCGTT
CGCGGTAACA GGATCGAAGA ATTCGATTTT GAATCCCAGC ATAAGAAACA GATCCGCGGC
AACATCTATC TGGCCAAAGT CACACGGGTC GAGCCTTCCT TGCAGGCCGC CTTCGTCGAT
TACGGCGGCA ATCGTCACGG CTTCCTGGCT TTTGCAGAAA TCCATCCCGA TTATTATCAG
ATCCCGCTTG CCGACCGTCA GGCCTTGCTG AAGGCTGAAG CCGAAGAGCA TGGCCGTCAC
GACGACGGCG ATTTCGAGCC GGTGCGCAGC AGAGATCCCG GCGAACGCGA CCAGCCGGTG
ATTGCCGATC CGGCCGAATT CGCCAATGAA GCCGAAGAAG TCGCTGGTCT CGCCGTCAAT
CAGGCGGATG ACGATCACGC GCAAACCACA GCCGAGCAGC CCGCAGATGC GCCGCAAGCC
GAGGCGTCAC AGACTGACGC AGTGCAGGCC GACGCAGTAC CGGCTGAGCC GCAAGCAGAC
GAGGCAGCCC CCGAGGCTGC AGCAAAGCCC AAGGCACGCC GTCCGCGCAA GCCCCGCAAG
AAGGCAGGCG AGGTTGAAGC CAGCGCCGAT GAAGCCGTCG CAGAACCTGT GGCCGTCGAA
AGTGACGAGA CACCAGATGA CGGATCGAGC AATGGCAGCA TGGCCGCCAT GGTCGACACG
GACTCGATCT CCGAAGAAAC CGATAGCCGC CATCGTCATG ACGATGATGA CGACGACGAT
GATGATGACG GCGAGAAGGA AGAAATCGAA TCTGTTGGCG CCGAAGACGC CATGGAAGAG
GTTCCCGACC GGGTGCGCCG CACGCCGCGC AAGCAATATC GCATCCAGGA AGTTATCAAG
CGCCGCCAGA TTCTTCTGGT GCAGGTCGCC AAGGAAGAAC GTGGCAACAA GGGTGCTGCG
CTGACCACCT ACCTGTCTCT GGCAGGCCGC TATTCTGTTC TGATGCCGAA TACGGCACGC
GGCGGCGGCA TTTCGCGCAA AATCACCAAC CCCGCCGACC GCAAGCGGTT GAAGGAAGTG
GCCCGCGATC TGGAAGTGCC GCTGGGCATG GGCGTTATCT TGCGCACCGC AGGTGCCAAT
CGCACCAAGG TCGAGGTCAA GCGCGATTTC GAATATCTGA TGCGTCTCTG GGAAAACGTT
CGCACCCTGA CGCTGAATTC CACCGCACCT TGCCTCGTCT ACGAGGAAGG CTCACTGATC
AAGCGCTCGA TCCGCGACCT GTATAACAAG GATATCAGCG AGATCGTGGT GTCAGGCGAA
GAAGGCTATC GTGAAGCGAA AGACTTCATG AAAATGCTGA TGCCGAGCCA CGCCAAGGTG
GTTCAGCCCT ACCGCGACAT TCACCCGATC TTCTCGCGCT CCGGCATTGA GGCCCAGCTG
GACCGGATGT TGCAGCCGCA GGTGACGCTG AAGTCTGGTG GTTATATCAT CATCAACCAG
ACCGAAGCGC TGGTGTCCAT CGACGTGAAC TCGGGTCGTT CGACCCGCGA ATATTCCATC
GAAGACACCG CCCTGCAAAC CAATCTGGAA GCCGCGGAAG AAGTGGCCCG CCAGTTGCGC
CTGCGCGACC TTGCAGGTCT GATCGTCATC GACTTCATCG ACATGGAAGA GAAGCGCAAC
AACCGCTCCG TCGAGAAGAA GCTGAAGGAT TGCCTGAAAA ACGATCGCGC CCGTATTCAG
GTCGGACGTA TTTCGCATTT CGGTCTGCTG GAAATGTCGC GTCAGCGCAT TCGCGCCAGC
GTGTTGGAAT CGACCACCCA GGTCTGCCAG CATTGCTCCG GCACAGGCCT GATCCGTTCG
CAGTCCTCCG TTGCCCTGCA TGTACTGCGC GGCGTCGAAG AATATCTGCT GAAAAGCACC
ACGCACGATA TTACCGTGCG TACCCTGCCG GAAACGGCGC TTTACCTGCT CAACCACAAG
CGCGGCTCGA TTGTCGATTA TGAAAACCGC TTCGGCGTGT CGATCATCAT CGACTCGGAT
GCCAGCGTCG GTCACCAGCA TTTCGCCATC GACAAGGGCG AGCCGGTTGC CAATCCGGTC
CGCATCGAAA CCTTGCTGCC GCTGATCAGT GAGCCGGAAG AGGACGACCC GATCATTGAG
ATCGAGGAAG AGGATGACGA GGACGTCGTT GAGGCTCCTG TTCAGGCACA GCCCGCATCA
AGTGGCAATG CTGCAGCAAA CGCCGCCGAA GACGGCAACC GCAAGCGCAA GCGCCGCCGC
CGCCGCCGTG GCAAGAATGG CAATGGCCAT GCCGATGGAC AGCAGAACGC TGCCGGCGGT
GACGAAGGCG ACGATGACAG CGAAGGCGAA GACGACGCCG AAGATACGGC AGAAGATCGC
GATGATAGCG TCGAGGCCTC TGACGCGTCT GAAGACGGCA ACAGCGAAAG CCAGCGCCGC
AACAAGCGCC GCCGTCGTGG CAAGCGTGGT GGGCGTCGCG GTCGCGATGA AAATGGTGTG
AGCGCCGATG CCGAAGGTAA TGACACTGCT GAAGATGACG ATTCTGCTGA AGAGTCAGTG
CAAGCCGATG CCGATCAGGC TGTCGCCGTC GCTGAGGTTC CGTCCGATGC CGTCGCCGAC
AGTGTTGTGG TGGCTGCCGA GGTCAGTGTC CCAGCAACAG AGGCCGTGAA AGCCGATGAG
CCAGTGGCTG CCAAGCCACG CCGGGCTCGC AAGCCGAAAG CGTCAGCCAA AACCGAAGCC
GCCGACAGCG TCGAAACGGT AACGGAACCT GCTGCTGTGC CTGAGGCTGT GGTTGTCGAA
GCACCGGCTG CTGCCGAGCC TGTCGCCGCC TCCCCCGTCT CGGAAGAGAC GTCAGTACCG
GCACCTGCTC AGGACGTCTC TGCACCAGAG CCTGCGGTCG AAGCGCCTGC TCCTGAAGTT
GCGAGCGAGC CAGAGGCCGT AAGTGATGCC AGTGCCGAAA AGCCGGTGCG CGCCAATCGG
TCGTCCAATG TCAGCACATC CGAACCGGTC GTTACCTCGG TGACCAACGG CGAGGAAGCT
CCGAAGCCCA AGAAGGGCGG ATGGTGGCAG AAGCGCGGTT TCCTCTAG
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| Protein sequence | MADKMLIDAS HEEETRVVVV RGNRIEEFDF ESQHKKQIRG NIYLAKVTRV EPSLQAAFVD
YGGNRHGFLA FAEIHPDYYQ IPLADRQALL KAEAEEHGRH DDGDFEPVRS RDPGERDQPV
IADPAEFANE AEEVAGLAVN QADDDHAQTT AEQPADAPQA EASQTDAVQA DAVPAEPQAD
EAAPEAAAKP KARRPRKPRK KAGEVEASAD EAVAEPVAVE SDETPDDGSS NGSMAAMVDT
DSISEETDSR HRHDDDDDDD DDDGEKEEIE SVGAEDAMEE VPDRVRRTPR KQYRIQEVIK
RRQILLVQVA KEERGNKGAA LTTYLSLAGR YSVLMPNTAR GGGISRKITN PADRKRLKEV
ARDLEVPLGM GVILRTAGAN RTKVEVKRDF EYLMRLWENV RTLTLNSTAP CLVYEEGSLI
KRSIRDLYNK DISEIVVSGE EGYREAKDFM KMLMPSHAKV VQPYRDIHPI FSRSGIEAQL
DRMLQPQVTL KSGGYIIINQ TEALVSIDVN SGRSTREYSI EDTALQTNLE AAEEVARQLR
LRDLAGLIVI DFIDMEEKRN NRSVEKKLKD CLKNDRARIQ VGRISHFGLL EMSRQRIRAS
VLESTTQVCQ HCSGTGLIRS QSSVALHVLR GVEEYLLKST THDITVRTLP ETALYLLNHK
RGSIVDYENR FGVSIIIDSD ASVGHQHFAI DKGEPVANPV RIETLLPLIS EPEEDDPIIE
IEEEDDEDVV EAPVQAQPAS SGNAAANAAE DGNRKRKRRR RRRGKNGNGH ADGQQNAAGG
DEGDDDSEGE DDAEDTAEDR DDSVEASDAS EDGNSESQRR NKRRRRGKRG GRRGRDENGV
SADAEGNDTA EDDDSAEESV QADADQAVAV AEVPSDAVAD SVVVAAEVSV PATEAVKADE
PVAAKPRRAR KPKASAKTEA ADSVETVTEP AAVPEAVVVE APAAAEPVAA SPVSEETSVP
APAQDVSAPE PAVEAPAPEV ASEPEAVSDA SAEKPVRANR SSNVSTSEPV VTSVTNGEEA
PKPKKGGWWQ KRGFL
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