| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_1756 |
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| Symbol | topA |
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| ID | 7386745 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 1468288 |
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| End bp | 1471002 |
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| Gene Length | 2715 bp |
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| Protein Length | 904 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 643651065 |
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| Product | DNA topoisomerase I |
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| Protein accession | YP_002549266 |
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| Protein GI | 222148309 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0550] Topoisomerase IA |
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| TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATGTAG TCGTTGTCGA ATCCCCTGCC AAAGCCAAGA CGATCAACAA GTATCTCGGA
CCGGGATATA AGGTGCTCGC CTCCTTCGGC CATGTCCGCG ACCTGCCTGC CAAGGACGGT
TCGGTCCTGC CGGATCAGGA TTTCGAGATG CTATGGGAAG TGGACACCGC CTCCGCCAAA
CGCATGAAGG ACATTGCCGA TGCGATGAAG GGGGCCGACG CCTTGTTTCT CGCAACCGAC
CCGGATCGTG AGGGTGAAGC GATTTCCTGG CATGTGCTGG ATCTCTTGAA GAAGAAGAAG
GTGATCGGCG ACAAGCCGGT GAAGCGCGTG GTTTTCAACG CCATCACCAA GAAAGCCGTG
CTCGACGCCA TGGCTGCCCC GCGTGATATC GATGGCGATC TGGTCGATGC CTATCTGGCG
CGCCGTGCGA TGGACTATCT GGTTGGCTTC AACCTGTCGC CGGTTCTGTG GCGCAAGCTG
CCCGGTGCCC GTTCGGCAGG CCGCGTCCAA TCGGTGGCCC TGCGGCTGGT TTGCGACCGG
GAAAACGAGA TCGAACGATT CGTCTCGGAA GAATACTGGA ACCTGTCGGC GCTTCTGAAG
ACTCCACGCG GCGATGAATT CCTGGCTCGT CTGGTGTCCG CGGATGGCAA GCGCTTGCAA
GCGCGCAGCG TTGGCAATGG CGACATGGCC AACCGGCTGA AAGACCTGCT CGACGGCGCC
AACTATGTGG TGGAATCGAT TGAGGCTAAG CCCGTCAAGC GCAACCCGTC GCCACCCTTT
ACAACCTCTA CGCTACAACA GGCCGCCTCC TCCAAGCTCG GCTTTTCCGC CTCACGCACC
ATGCAGGTGG CGCAGAAGCT TTATGAAGGC GTTGATATTG GCGGCGAGAC CGTCGGTCTG
ATCACCTATA TGCGTACCGA TGGCGTCCAG ATGGCCCCGG AAGCCATTGA GGCCGCCCGC
TCCGCAATTA CCCAGCAATT CGGCCCGCGC TACATGCCGG AAAAGCCGCG CTTCTATTCC
ACCAAGGCGA AAAACGCCCA GGAAGCGCAT GAAGCCATCC GCCCGACCGA TTTCAACCGG
ACGCCGGATC AGGTGCGCCG CTATCTCGAT GCCGACCAGT TGCGCCTCTA CGATCTGGTC
TGGAAGCGCG GCATTGCCAG TCAGATGGCG TCTGCCGAAA TCGAGCGGAC CACCGCTGAA
ATCCTCGCCG ACAAGGCCGG TGAAAAAGCC GGTCTGCGCG CCGTTGGTTC CGTCATCCGC
TTCGACGGAT TTATCGCCGC CTATACCGAC CACCGTGAGG AAGGCGAAAA GAGCGACGAC
GATGATGAAG ATGGCCGTCT GCCGGAGATC AACGCCCGCG AGGCGCTGGC CAAGCAAAAG
GTCAACGCCA CCCAGCATTT CACCGAGCCG CCACCGCGCT ATTCGGAAGC GACCCTGATC
AAAAAGATGG AAGAGCTTGG CATTGGCCGG CCCTCCACCT ATGCCGCAAC GCTGAAGACG
CTCAGCGACC GTGAATATGT TGTTATCGAC AAGCGCAAGC TGATCCCCGA AGCCAAGGGC
CGATTGGTGA CGGCGTTCTT GGAAAGCTTC TTCACCCGCT ATGTCGAATA TGATTTCACC
GCCGATCTTG AAGAAAAGCT CGACAAGATT TCTGCCGGTG AGCTGAACTG GAAGGACGTG
CTGCGCGAAT TCTGGCAGAA TTTCTTTGCC CAGATCGAAG GCACCAAGGA ATTGCGCGTC
ACCAACGTGC TCGACGCCCT GAACGAGGCC TTGGCCCCGC TGGTGTTCCC GAAGCGCGAA
GATGGCTCGG ACCCGCGCAT TTGCCAGGTT TGTGGCACCG GCAATCTGTC GCTGAAGCTC
GGTAAGTACG GCGCTTTTGT CGGCTGCTCC AATTATCCGG AATGCAACTT CACCCGCCAA
TTGTCCGCCG ATGGCGGCAC GGAAGCGGAA GCCGTCGGCA ATGAACCGAA AGCACTGGGT
GAAGATCCGA CAACCGGTGA ACAGATCACA CTTCGCAGCG GCCGTTTCGG CCCTTACGTC
CAGCGTGGCG ATGGCAAGGA AGCCAAGCGC TCGTCCCTGC CCAAGGGTTG GTCGCCGACC
GATGTGGATT TTGACAAGGC GCTGTCACTG CTGTCGCTGC CGCGCGAAGT CGGCCTTCAC
CCGGAAACCG GTAAGATGAT GACTGCGGGG CTTGGCCGCT ACGGACCTTT CGTGCTGCAC
GATGGCACCT ATGCCAATCT CGATGGTATC GAGGATGTGT TGACCATCGG CCTCAACCGA
GCCGTCACGG TTCTGGCTGA AAAGCAGGCC AACCCCGGTG GCCGTGGCCG CGCCGCACCT
GCCGCCCTGA AAGAGATCGG CGATCATCCC GATGGCGGTG CGATTACCGT GCGCGATGGC
CGCTATGGTC CCTACGTGAA TTGGGGTAAG ATCAATGCGA CCATTCCCAA AGGCATGGAC
CCGCAAGCCG TGACCATGGA AGAGGCGATT GCCCTGATCG TCGAGCGCGC AGCCAAGGAA
GGCAGCGGCA AGACCAAGGC GAAACCTGCG GCCAAATCCG CCAGCGCAAA GAAGGCGCCT
GCGAAAAAAC CGGCTGCGAA AGCCACCAAG GCCGATGCGG ATGACGCCGC CGACGCCAAA
CCAAAGAAAG CAGCTGCCAA GCCGAAGGCA ACAAAGCCCA AGGCAAAGCC CGCCGCAAAA
ACAGAGAAAG CCTGA
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| Protein sequence | MNVVVVESPA KAKTINKYLG PGYKVLASFG HVRDLPAKDG SVLPDQDFEM LWEVDTASAK
RMKDIADAMK GADALFLATD PDREGEAISW HVLDLLKKKK VIGDKPVKRV VFNAITKKAV
LDAMAAPRDI DGDLVDAYLA RRAMDYLVGF NLSPVLWRKL PGARSAGRVQ SVALRLVCDR
ENEIERFVSE EYWNLSALLK TPRGDEFLAR LVSADGKRLQ ARSVGNGDMA NRLKDLLDGA
NYVVESIEAK PVKRNPSPPF TTSTLQQAAS SKLGFSASRT MQVAQKLYEG VDIGGETVGL
ITYMRTDGVQ MAPEAIEAAR SAITQQFGPR YMPEKPRFYS TKAKNAQEAH EAIRPTDFNR
TPDQVRRYLD ADQLRLYDLV WKRGIASQMA SAEIERTTAE ILADKAGEKA GLRAVGSVIR
FDGFIAAYTD HREEGEKSDD DDEDGRLPEI NAREALAKQK VNATQHFTEP PPRYSEATLI
KKMEELGIGR PSTYAATLKT LSDREYVVID KRKLIPEAKG RLVTAFLESF FTRYVEYDFT
ADLEEKLDKI SAGELNWKDV LREFWQNFFA QIEGTKELRV TNVLDALNEA LAPLVFPKRE
DGSDPRICQV CGTGNLSLKL GKYGAFVGCS NYPECNFTRQ LSADGGTEAE AVGNEPKALG
EDPTTGEQIT LRSGRFGPYV QRGDGKEAKR SSLPKGWSPT DVDFDKALSL LSLPREVGLH
PETGKMMTAG LGRYGPFVLH DGTYANLDGI EDVLTIGLNR AVTVLAEKQA NPGGRGRAAP
AALKEIGDHP DGGAITVRDG RYGPYVNWGK INATIPKGMD PQAVTMEEAI ALIVERAAKE
GSGKTKAKPA AKSASAKKAP AKKPAAKATK ADADDAADAK PKKAAAKPKA TKPKAKPAAK
TEKA
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