| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_1741 |
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| Symbol | lolD |
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| ID | 7386733 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 1451733 |
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| End bp | 1452422 |
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| Gene Length | 690 bp |
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| Protein Length | 229 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 643651053 |
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| Product | ABC transporter nucleotide binding/ATPase protein (lipoprotein) |
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| Protein accession | YP_002549254 |
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| Protein GI | 222148297 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1136] ABC-type antimicrobial peptide transport system, ATPase component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00216433 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGCGAACA ACCCTGTTCT TGAAATTTCG GAGGTTTCGC GCACCTATGG GGAAGGCGAA
ACCAAGCTTT CCATTCTGAA AGGCGCCGGC CTAAAATTAT ACGAAGGCGA AACCGTCGCT
CTCGTTGCTC CGTCGGGCAC GGGCAAGTCC ACCCTGCTGC ATATTGCCGG GCTGCTGGAA
CATCCGACGG ATGGCGACGT GCTGATTGGC GGCACCCGTT GCAATGAGTT GTCCGAGGAA
GGCCGCACGG CCATGCGCCG CACCAGCATT GGCTTCGTCT ATCAGTTCCA TCACCTGTTG
CCGGAGTTTT CGGCGCTTGA AAACATCATG ATGCCGCAGA TGATTGCGGG CTTGAGCATT
CCGGAAGCCA GCAAGCGTGC CAAGGCTTTG CTTGATTACA TGCGCATCGG CCATCGCGGT
GATCACCGTC CCGCCGAACT TTCTGGCGGC GAACAGCAGC GCGTGGCCAT TGCCCGTGCG
GTTGCCAATG CGCCGCTGTT GCTGTTGGCG GACGAGCCGA CCGGCAATCT CGATCCGGAA
ACTGCAGCTT ATGTGTTTTC CGCGTTGGAA GCGCTGGTGC GCCAGTCCGG TCTTGCGGCG
TTGATTGCGA CCCATAATCA CGAACTGGCC CGGCGGATGG ACCGCTGCGT CACTCTCCAG
GACGGCAGAA TCGTCGATTT CGATTTGTAA
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| Protein sequence | MANNPVLEIS EVSRTYGEGE TKLSILKGAG LKLYEGETVA LVAPSGTGKS TLLHIAGLLE
HPTDGDVLIG GTRCNELSEE GRTAMRRTSI GFVYQFHHLL PEFSALENIM MPQMIAGLSI
PEASKRAKAL LDYMRIGHRG DHRPAELSGG EQQRVAIARA VANAPLLLLA DEPTGNLDPE
TAAYVFSALE ALVRQSGLAA LIATHNHELA RRMDRCVTLQ DGRIVDFDL
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