Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_1701 |
Symbol | hupA |
ID | 7386703 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | + |
Start bp | 1419015 |
End bp | 1419290 |
Gene Length | 276 bp |
Protein Length | 91 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 643651020 |
Product | HU-like DNA-binding protein alpha subunit |
Protein accession | YP_002549224 |
Protein GI | 222148267 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0776] Bacterial nucleoid DNA-binding protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.512418 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAACAAGT CCGAACTCGT AAACGCAGTT GCCGATAAGG CCGGTCTCAG CAAGGCCGAC GCAGCTTCCG CCGTGGACGC CGTCTTTGAC ACCGTCCAGG CGGAATTGAA GAATGGTGGC GACATTCGCC TCGCCGGTTT TGGCGCCTTC ACGGTTTCCC ATCGCGAAGC CTCGAAGGGC CGCAATCCTT CGACTGGCGC GGAAGTTGAT ATTCCGGCCC GTAACGTTCC GAAGTTCACG GCCGGCAAGG GCCTGAAGGA CGCTGTTAAC AGCTGA
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Protein sequence | MNKSELVNAV ADKAGLSKAD AASAVDAVFD TVQAELKNGG DIRLAGFGAF TVSHREASKG RNPSTGAEVD IPARNVPKFT AGKGLKDAVN S
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