Gene Avi_1644 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_1644 
Symbol 
ID7386663 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011989 
Strand- 
Start bp1374593 
End bp1375255 
Gene Length663 bp 
Protein Length220 aa 
Translation table11 
GC content64% 
IMG OID643650979 
Producttranscriptional regulator 
Protein accessionYP_002549184 
Protein GI222148227 
COG category[K] Transcription 
COG ID[COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGTCCATCC GCTTCGGTAT TCTTTGCTTT CCCAATGTTC AGCAACTCGA TCTGACTGGC 
CCCTACGAGG TTTTCGGCTC TGCACGCGAT GCGCGGGTCG ATCTGGTCTG GAAAAACACG 
GCGCCTGTTC GGGCTTCGAC GGGCTTGTGG CTCAGGCCCG ACCTGGCCTT TGAAGAGGCG 
CCTGCGTTCG ATGTCATCTG CGTGCCGGGC GGCGGCGGCG TGAACGCGCT TCTGACAGAC 
GAAGAAACGC TCGACTTCGT GCGGGCGCAA GCGAAGACGG CGCGCTTCGT CACCTCTGTC 
TGCACCGGAG CGTTGGTCCT GGGCCAAGCC GGCTTGCTCG CTGGAAAGCG CGCGGCGACG 
CATTGGAACG CAATGGATTT TCTCCCACGG TTCGGGGCGA CCGCAGTCGA GGCGCGCGTG 
GTTCGCGACG GCAATCTGAT CACCGCCGGT GGCGTCACAT CCGGGATCGA TTTCGGCCTG 
TCGGTCATCG CGGAGTTAAT GGGACAGGAC GAGGCGGAGA CGATCCAGCT CTCGCTGGAA 
TACGCCCCTG CTCCGCCCTT TGATGCCGGA TTGCCGGCGC GGGCGCGCCC GGAAATTCTT 
GCGGCGGCCC GCCAACGCAT GGTTCGGTCC AGGCAAGAGC GAGAGGCGCT GATTTCGCCT 
TGA
 
Protein sequence
MSIRFGILCF PNVQQLDLTG PYEVFGSARD ARVDLVWKNT APVRASTGLW LRPDLAFEEA 
PAFDVICVPG GGGVNALLTD EETLDFVRAQ AKTARFVTSV CTGALVLGQA GLLAGKRAAT 
HWNAMDFLPR FGATAVEARV VRDGNLITAG GVTSGIDFGL SVIAELMGQD EAETIQLSLE 
YAPAPPFDAG LPARARPEIL AAARQRMVRS RQEREALISP