Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_1610 |
Symbol | glyA |
ID | 7387406 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | + |
Start bp | 1350531 |
End bp | 1351820 |
Gene Length | 1290 bp |
Protein Length | 429 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 643650955 |
Product | serine hydroxymethyltransferase |
Protein accession | YP_002549160 |
Protein GI | 222148203 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0112] Glycine/serine hydroxymethyltransferase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCCAATA CCGATGCTTT CTTTTCCCGT CCGCTTGCCG AAACCGACCC GGATATTTTT GGTGCGATTG AAAAGGAGCT CGGTCGTCAA CGCCATGAAA TCGAGCTGAT TGCGTCTGAA AACATCGTCT CGCGCGCCGT GCTGGAAGCG CAAGGCTCGA TCATGACCAA CAAATATGCC GAGGGCTATC CGGGCAAGCG CTATTACGGT GGCTGTCAGT TCGTGGATAT TGCCGAGGAA TTGGCGATTG AGCGCGCCAA GAAGCTGTTT GGCGTCAATT TTGCCAATGT TCAGCCCAAT TCCGGTTCGC AGATGAACCA GGCCGTGTTC CTGGCACTGT TGCAGCCGGG CGATACCTTC ATGGGTCTCG ACCTGAATTC CGGGGGCCAT CTGACCCACG GTTCGCCGGT CAACATGTCC GGCAAGTGGT TCAACGTCGT CTCCTATGGC GTGCGTCAGG ACGATAATCT TCTGGACATG GATGCGGTGG CTGAATCGGC TCGTAAACAC AAGCCCAAGC TGATCATCGC CGGTGGCACA GCCTATTCGC GGATCTGGGA CTGGAAGCGC TTCCGCGAGA TCGCCGACGA AGTCGGCGCC TATCTGATGG TTGACATGGC CCATATCGCC GGTCTGGTTG CCGGTAACCA GCATCCGTCG CCGTTCCCGC ATTGCCACGT CGCCACCACC ACGACCCACA AGTCGCTGCG TGGCCCGCGT GGCGGCATGA TCCTCACCAA TGACGAGGAT CTGGCCAAGA AATTCAATTC GGCTGTCTTC CCAGGCCTCC AGGGCGGCCC GCTGATGCAT GTGATTGCCG CCAAGGCGGT TGCCTTCGGT GAGGCCTTGC AGCCGGAATT CCAGGATTAT GCCGCTCAGG TGGTGAAAAA CGCCAAGGCC CTGTCCGAAA CCCTGGTCAA GGGTGGCCTC GATATCGTCT CCGGCGGTAC CGACAATCAT TTGATGCTGG TCGACCTGCG CAAGAAGAAC GCCACCGGCA AGCGCGCCGA GGCAGCCCTT GGCCGCGCCT ATGTCACCTG CAACAAGAAC GGCATTCCGT TCGATCCTGA AAAGCCCTTC GTTACTTCTG GTGTTCGCCT TGGCACGCCA GCTGGCACGA CCCGTGGCTT CAAGGAGGCT GAATTCATCG AAATCGGCAA TCTGATCGTT GAGGTTCTCG ACGGTCTGAA GGTTGCCAAT TCCGACGAGG GCAATAGCGC CGTCGAGGCA AGCGTGCGCG ACAAGGTCAT TGGCCTGACG GGCCGTTTCC CGATGTATCC TTACCTGTAA
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Protein sequence | MANTDAFFSR PLAETDPDIF GAIEKELGRQ RHEIELIASE NIVSRAVLEA QGSIMTNKYA EGYPGKRYYG GCQFVDIAEE LAIERAKKLF GVNFANVQPN SGSQMNQAVF LALLQPGDTF MGLDLNSGGH LTHGSPVNMS GKWFNVVSYG VRQDDNLLDM DAVAESARKH KPKLIIAGGT AYSRIWDWKR FREIADEVGA YLMVDMAHIA GLVAGNQHPS PFPHCHVATT TTHKSLRGPR GGMILTNDED LAKKFNSAVF PGLQGGPLMH VIAAKAVAFG EALQPEFQDY AAQVVKNAKA LSETLVKGGL DIVSGGTDNH LMLVDLRKKN ATGKRAEAAL GRAYVTCNKN GIPFDPEKPF VTSGVRLGTP AGTTRGFKEA EFIEIGNLIV EVLDGLKVAN SDEGNSAVEA SVRDKVIGLT GRFPMYPYL
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