Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_1588 |
Symbol | rnd |
ID | 7387390 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | - |
Start bp | 1328221 |
End bp | 1329375 |
Gene Length | 1155 bp |
Protein Length | 384 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 643650939 |
Product | ribonuclease D |
Protein accession | YP_002549144 |
Protein GI | 222148187 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0349] Ribonuclease D |
TIGRFAM ID | [TIGR01388] ribonuclease D |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATTTCTA CAACTCAAGA TTTAGAAGCC GCTTGCGAAA AACTGGCCAA ATCTGAATTT ATCACCATTG ATACGGAATT CCTGCGTGAA ACCACTTTCT GGCCGGAGCT GTGCCTGATC CAGATGGCCA GTCCCGATCT AGAGGTCATT GTCGATCCGC TGGCCGAGGG GCTCGATCTT GCACCCTTTT TCAAGTTGAT GGCCAATGGC GATGTGATCA AGGTGTTTCA CGCCGCGCGC CAGGATATTG AAATCATTTT TCACCTGGGC AATCTCATTC CCCATCCAAT CTTCGACACC CAGGTGGCGG CCATGGTCTG CGGCTTTGGC GACAGCGTGT CCTATGACCA GCTGGTCCAG AAGATCAAGA ATATCCATAT CGATAAAAGC TCGCGCTTTA CCGACTGGAG CCGCCGTCCG CTTTCGGAAA AGCAGCTGGA TTACGCGCTC GCCGATGTCA CCCATCTGCG CGATGTCTAC CTGACTCTGA ACGCAGAACT GGAGCGTGAA GGCCGCGCCA GCTGGCTGAG CGAGGAAATG GCCATCCTCG AATCCCGCGA CACCTATGAT CTACACCCGG ACGATGCCTG GCAACGGCTG AAGATGCGGC TGAGAAAACC GCAGGAGCTG ATGGTGATGA AGGCCGTGAC CGCCTGGCGC GAGCGTGAGG CCCGCGCCCG CAACGTCCCC CGCTCACGGG TGATCAAGGA CGACGCTATT TTCGAAATCG CCCAGCAGCA GCCCAGGGAT GTCGAGGCGC TCGGACGGCT CCGGACCATT CCGAAGGGCT GGGAGCGCTC GGCACCGGGC GGCGCGATCA TCGACGCGGT CAATGCCGCC CTGGCAATTC CCAAGGCCGA ATGGCCGCAG GTCCAACGCC AGAACCATGT GCCGGAAGGC ACGGCACCGG CTGTGGAACT GCTCAAGGTA CTGCTGCGCC TGACCTGCGA ACAGCATGGC GTCGCCGCCA AGATGATCGC CAATACCGAC GACCTGGAAA AGATTGCCGT CGAGGGCGAA CAGGCCGATG TGCAGGCCAT GCGCGGCTGG CGGCGTGATC TGTTCGGCGA ATCGGCGCTG AAGCTGATCA ATGGCGGGGT TGCCCTCCGC TTCGTCGGCA AGAAGATCGA AGCCGTCGAA TTTATCGAAC CTTGA
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Protein sequence | MISTTQDLEA ACEKLAKSEF ITIDTEFLRE TTFWPELCLI QMASPDLEVI VDPLAEGLDL APFFKLMANG DVIKVFHAAR QDIEIIFHLG NLIPHPIFDT QVAAMVCGFG DSVSYDQLVQ KIKNIHIDKS SRFTDWSRRP LSEKQLDYAL ADVTHLRDVY LTLNAELERE GRASWLSEEM AILESRDTYD LHPDDAWQRL KMRLRKPQEL MVMKAVTAWR EREARARNVP RSRVIKDDAI FEIAQQQPRD VEALGRLRTI PKGWERSAPG GAIIDAVNAA LAIPKAEWPQ VQRQNHVPEG TAPAVELLKV LLRLTCEQHG VAAKMIANTD DLEKIAVEGE QADVQAMRGW RRDLFGESAL KLINGGVALR FVGKKIEAVE FIEP
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