Gene Avi_1516 details

Gene Information

• Locus tag: Avi_1516
• Symbol: rplI
• ID: 7386477
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: -
• Start bp: 1270732
• End bp: 1271307
• Gene Length: 576 bp
• Protein Length: 191 aa
• Translation table: 11
• GC content: 60%
• IMG OID: 643650885
• Product: 50S ribosomal protein L9
• Protein accession: YP_002549090
• Protein GI: 222148133
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0359] Ribosomal protein L9
• TIGRFAM ID: [TIGR00158] ribosomal protein L9

Plasmid Coverage information

• Num covering plasmid clones: 5
• Plasmid unclonability p-value: 0.101233
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCAAGTCA TTCTTCTCGA GCGCATCGCC AAGCTTGGCC AGATGGGCGA AGTGGTCAAG 
GTTCGTGACG GCTTTGCCCG TAACTACCTG CTGCCAACCG GCAAGGCGCT GCGCGCCAAT 
GCCGCCAACA AGGCCCGTTT CGACGCCGAG CGTTCCACGC TCGAAGCCCG CAACCTGGAG 
CGCAAGTCCG AAGCCCAGAC CGTTGCTGAC GTTCTGAACG GCAAGTCGTT CATCGTCGTC 
CGTTCGGCTG GCGAAACCGG CCAGCTCTAC GGTTCGGTTG CGGCTCGCGA CATCATCGAA 
GCTCTGGCTG CCGAAGGCTT TACCGTTTCG CGCAATCAGG TCGAGCTGAA CAACCCGATC 
AAGACCATCG GCCTGCATAA CGTTACCATG CACCTGCATG CCGAAGTTGA AATCGCTATC 
GAAATCAACG TTGCCCGTTC CGCTGAAGAA GCCGAGCGTC AGGCAAAGGG CGAAAGCCTC 
ACCTCCGCCG ACGCCATCTA CGGCGTGGAC GAAGACGCGC TGCGTCCGGA AGACTTCTTC 
GATCCGGATG CCGACCGCGA CGGCGACGAC GAATAA 

 

Protein sequence

MQVILLERIA KLGQMGEVVK VRDGFARNYL LPTGKALRAN AANKARFDAE RSTLEARNLE 
RKSEAQTVAD VLNGKSFIVV RSAGETGQLY GSVAARDIIE ALAAEGFTVS RNQVELNNPI 
KTIGLHNVTM HLHAEVEIAI EINVARSAEE AERQAKGESL TSADAIYGVD EDALRPEDFF 
DPDADRDGDD E