Gene Avi_1490 details

Gene Information

• Locus tag: Avi_1490
• Symbol: rfbC
• ID: 7386458
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: +
• Start bp: 1249308
• End bp: 1249871
• Gene Length: 564 bp
• Protein Length: 187 aa
• Translation table: 11
• GC content: 57%
• IMG OID: 643650866
• Product: dTDP-4-dehydrorhamnose 3,5-epimerase
• Protein accession: YP_002549071
• Protein GI: 222148114
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG1898] dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes
• TIGRFAM ID: [TIGR01221] dTDP-4-dehydrorhamnose 3,5-epimerase

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCAGTTTG AAGAAACGAA GCTGTCGGGT GTTTTCCTGA TCACTCCAAA GCGGTTTGGG 
GACGCGCGGG GCTATTTCAT GGAAACCTTC CGTGCCAGCC TGTTTGAAAG CGAAGTGGGA 
TCTTTCACCT TCGTTCAGGA CAACAAGTCG TTTTCGGCCG AGGTCGGCAC GGTGCGCGGC 
CTGCATTTCC AGTTGAACCC GAGGGCGCAG GGCAAGCTCG TGTCTTGTGC GGCTGGCGCT 
TTGCTGGATG TCGCTGTCGA TATTCGCCAG GGCTCGCCGA CCTACGGCCA GATGGTCAAA 
GCCGAACTGA CTGCCGAAAA CGGCTGCCAG CTTTGGGTGC CGCCGGGTTT TGCCCATGGC 
TTCTGCACAT TGCAGCCCAA TACCGTGATC AGCTACAAGG TGACGGATTA TTACAGCCCG 
GATCATGACC GGGGCCTGTT GTGGAACGAT CCGGCTCTGG CGATCGACTG GCCGGTGACG 
GAGGACAATG CCATTCTGTC TGAGAAGGAC AAGAAGCAGC CGAAACTGAG CGAGCTTGAG 
ACGAATTTCG TCTATCGGCC TTAA 

 

Protein sequence

MQFEETKLSG VFLITPKRFG DARGYFMETF RASLFESEVG SFTFVQDNKS FSAEVGTVRG 
LHFQLNPRAQ GKLVSCAAGA LLDVAVDIRQ GSPTYGQMVK AELTAENGCQ LWVPPGFAHG 
FCTLQPNTVI SYKVTDYYSP DHDRGLLWND PALAIDWPVT EDNAILSEKD KKQPKLSELE 
TNFVYRP