| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_1432 |
|---|
| Symbol | dapA |
|---|
| ID | 7386416 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | + |
|---|
| Start bp | 1208519 |
|---|
| End bp | 1209403 |
|---|
| Gene Length | 885 bp |
|---|
| Protein Length | 294 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 643650824 |
|---|
| Product | dihydrodipicolinate synthase |
|---|
| Protein accession | YP_002549029 |
|---|
| Protein GI | 222148072 |
|---|
| COG category | [E] Amino acid transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0329] Dihydrodipicolinate synthase/N-acetylneuraminate lyase |
|---|
| TIGRFAM ID | [TIGR00674] dihydrodipicolinate synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.230305 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTCCAGG GTTCCATGCC CGCGCTTGTC ACGCCGTTCA CCGAAACCGG GGCGATTGAC
GAGAAAGCCT TTGCCGCTCA TGTCGAATGG CAGATCGCCG AAGGCAGTTC CGGCCTGGTG
CCGGTCGGCA CCACAGGCGA ATCGCCAACC CTGACCCATG CCGAGCACAA ACGGGTGGTG
GAGCTGTGCA TCGAAGTGGC CGCCAAGCGG GTTCCGGTGA TTGCCGGCGC TGGCTCCAAT
AATACGATGG AAGCCATCGA TCTCGCCCAG CATGCTGAAA AGGCCGGGGC GGATGCCGTG
CTTGTCGTGA CGCCCTATTA TAACAAGCCG ACTCAAAAGG GGCTGATCGC ACATTTCTCG
GCGATTGCGC AGGCGGTCTC CCTGCCGATC ATCATCTACA ATATTCCGCC GCGCTCGGTG
ATCGACATGA GCCCGGAAAC CATGGGCAAG CTGGCCCAGG CCCATAAAAC CATTGTCGGC
GTCAAGGACG CCACCGGCAA GCTGGAGCGG GTTTCCGAAC AGCGGATCAC CTGCGGGCGC
GATTTCATCC AGCTGTCCGG CGAGGATGCG ACCGCGCTGG GTTTCAACGC CCATGGTGGG
GTTGGCTGCA TTTCGGTGAC GGCCAATGTC GCGCCGCGCC TGTGCGCCGA GTTCCAGGCA
GCGACGCTGG CCGGGGATTT CGCCAAGGCG CTTGATTACC AGGACCGGCT GATGCCGCTG
CATAAGGCAA TTTTCCTGGA GCCAGGTCTT TGCGGGGCGA AATATGCCCT GTCTCAGCTC
GGCCGGATGG GCCGGACCGC CCGGCTGCCG CTGCTGTCGA CACTGGAAGC CTCTACCGAA
GCCGCAATCG ACGCGGCCCT TCAGCATGCG GGACTTATGA ACTGA
|
|---|
| Protein sequence | MFQGSMPALV TPFTETGAID EKAFAAHVEW QIAEGSSGLV PVGTTGESPT LTHAEHKRVV
ELCIEVAAKR VPVIAGAGSN NTMEAIDLAQ HAEKAGADAV LVVTPYYNKP TQKGLIAHFS
AIAQAVSLPI IIYNIPPRSV IDMSPETMGK LAQAHKTIVG VKDATGKLER VSEQRITCGR
DFIQLSGEDA TALGFNAHGG VGCISVTANV APRLCAEFQA ATLAGDFAKA LDYQDRLMPL
HKAIFLEPGL CGAKYALSQL GRMGRTARLP LLSTLEASTE AAIDAALQHA GLMN
|
|---|
| |