| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_1405 |
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| Symbol | |
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| ID | 7389132 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 1184685 |
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| End bp | 1186283 |
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| Gene Length | 1599 bp |
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| Protein Length | 532 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 643650803 |
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| Product | ABC transporter substrate binding protein (oligopeptide) |
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| Protein accession | YP_002549009 |
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| Protein GI | 222148052 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG4166] ABC-type oligopeptide transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCCAGA TGAAAATCAG ATTGGCAACG GCAGTGCTGG CAGGTTCCCT GCTGTTTGGT
GCAAGCAGTG CATTGGCGGA AGCGGTGTTG AACCGCGGCA ATGCAGGCGA ACCGAAATCG
CTCGATCCGG CGCATATCTC GATCGACATC GAAGGCTTTG TCATTCACGA CATGTTCGAA
GGCCTGACGA CGCATGACGC AAATGGTAAG ATCGTGCCTG GCGCCGCCGA AAGCTGGAAA
GTCTCCGACG ATGGCACTGT CTACACCTTT AAGATCCGCG ATAATGCCAA ATGGTCGGAT
GGTTCGCCGG TAACCGCGGA AGACTTCCAG TTCGCCATGC GCCGCCTGGA AGACCCAAAG
ACCGCCGCCG AATATGCCAA CCTGCTCTAT CCGATCAAGA ATGCGGAAGC CGTAAACACA
GGCAAGGCGC CCGTCGATCA GCTCGGCATC AAGATCGTCG ACGCCAAGAC GCTGGAAATC
ACCCTGGAGC GCTCAACGCC CTATTTTCTG CAACTGATGG CCCATTATAC GTCCTTGCCA
ATCAGCAAGG CCAATTACGA AAAATTCGGC GACCAGTTCG TCAAGCCCGG CAATATGGTC
AATAACGGCG CCTTCAAGCT GGAATCGCAT GTGCCGAACG ACAAGCTGGT TGTCGCCAAG
AACGACCAAT ATTGGGATGC CAAGAATGTC AAACTCGACA AGGTGATATT CTACCCAATT
GAAGATGACG CCGCCGCCGT TCGCCGTTAC GAAGCTGGTG AACTTGATGT CGTCTACAAT
TTCTCCGCCG ACCAGTTGAA GCGGTTGCGC GCTGCCTATA ACAGCCAGGT CCATGTCGAT
CCGGGTCTGG CAACCTATTA TTACACATTT GACATGCGCC AGGAGCCTAT GAGCGACGTG
CGCGTTCGCA AAGCTCTGTC TATGGCCGTA GACCGAGATT TCCTGTCGAG CGAAATCTAT
TCCGGTGCGC AATTGCCGCT CTATTCCATG GTGCCTCCGG GCATGGAAGG CTATGAAAAG
CCGGCCGCGC CCGATTTTGC CTCGCTGTCG CAAATCGACC GCGAAGACAA GGCCGTGGAA
TTGATGAAGG AGGCCGGTTA CGGCCAAGGC GGCAAGCCGC TCAACCTCGA AATCCGCTAC
AACACCAATA CCAACCACGA GCGCGTGGCG ACCGCCATTG CCGATATGTG GAAGACCACC
TTCGGTGCCA AAGTATCGCT CGTCAATCTA GACGTGGCCT CGCACTATTC TTACCTCAAG
GAAGGCGGCA AATACAGCGT CGCCCGTGCT GGCTGGGGGG CAGATTATGC CGACCCGGAA
AACTTCCTGG CGCTGACGAT CAGCACCAAC ACGACCTTCA ACTACAGCCA CTGGAACAAT
CCGGAATTCG ACGCGCTGAT GAAGAAGTCC TATGACGAAA AGGACCAGAA GGTGCGGATG
GACCTGATGC ATAAGGCTGA ACAGATCCTG GTGGATCAGC AGCCAGTGGC TCCGCTGATG
AACACGGCCA ATCTTTGGCT GGTGTCCAGC AAGGTTTCCG GTTGGGGCGA CAATGCCGTC
AACGAGCATT ATTCCAAGTA TCTCAGCGTA TCCAAGTAA
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| Protein sequence | MTQMKIRLAT AVLAGSLLFG ASSALAEAVL NRGNAGEPKS LDPAHISIDI EGFVIHDMFE
GLTTHDANGK IVPGAAESWK VSDDGTVYTF KIRDNAKWSD GSPVTAEDFQ FAMRRLEDPK
TAAEYANLLY PIKNAEAVNT GKAPVDQLGI KIVDAKTLEI TLERSTPYFL QLMAHYTSLP
ISKANYEKFG DQFVKPGNMV NNGAFKLESH VPNDKLVVAK NDQYWDAKNV KLDKVIFYPI
EDDAAAVRRY EAGELDVVYN FSADQLKRLR AAYNSQVHVD PGLATYYYTF DMRQEPMSDV
RVRKALSMAV DRDFLSSEIY SGAQLPLYSM VPPGMEGYEK PAAPDFASLS QIDREDKAVE
LMKEAGYGQG GKPLNLEIRY NTNTNHERVA TAIADMWKTT FGAKVSLVNL DVASHYSYLK
EGGKYSVARA GWGADYADPE NFLALTISTN TTFNYSHWNN PEFDALMKKS YDEKDQKVRM
DLMHKAEQIL VDQQPVAPLM NTANLWLVSS KVSGWGDNAV NEHYSKYLSV SK
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