| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_1389 |
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| Symbol | |
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| ID | 7389119 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 1167548 |
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| End bp | 1168855 |
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| Gene Length | 1308 bp |
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| Protein Length | 435 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 643650790 |
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| Product | HlyD family secretion protein |
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| Protein accession | YP_002548996 |
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| Protein GI | 222148039 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.379904 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAAAT TCTGGACCGC CTCCAGCATC ATCGCAATCC TTGCCGTCGG CGGGTGGATA
TATCGCGACC AAATTCCTTA TCTCGACAAG GTTCCGTTTC TGAGCCAAGC CAGCCAGACG
GCGGGCCACA AACCGGGTAC CGAACAGGCA ACGGCCCAAG CCAATGGGCA GCCAGCAGGA
CAGGAAGCCG GCAAACCGGC TGGCCAGGGA AGTGGCCAAG GGAGCGGCCA GGGGAACGGA
AAGAGTGGTG GCCGGCGCAA TGGCGGGCCA GCATCGGTCA AGACCGTTGC GGTCAGCATG
GGCAATCTGC CAATGGATGC CACGGCGACT GGCTGGGCCG AAGCCGAGGA TACCACGACA
CTGGCGGCCC TCAAGAGCGG TCTGCTTCAG GACGTGATCG CCAAGGACGG ACAGGAAGTA
AAGGCCGGAG ATCTGATTGC CCGGCTGGAT GACCGGATCG CAAAGGCGAC AGTGGACAAG
GACCAGGCCA ATATCGTTTC CGACCAGGCC AGCCTGGCCG AATACGAGGC TGCCTTGACG
CGTGCGGAAA GCTTGCTCAA GCAAAATGCG CAATCACAGC AGGCCTACGA ACAGGCAAAG
GCGTCGCGAG ATTCGGCAGC CGCCAAGGTT GATGCCGATA AGGCCACGCT GGCCTCCGAT
ATGGTCGACC TGGAGCATAT GAAAATCCGG GCACCCTTCG ATGGCCGGCT CGGAAGTATC
CAGCTCAGCA TCGGCGCCTA TGTCAGCGCC GGAACCGCTA TCGTCAGCAT CACCCGTTAC
AACCCGATCT ATGTGAAGTT CCAGATGGCG GAACGCTACC TGCCGCAATT GCATCAGGCG
TTTGCCGGCA AGGATGTTGT GGTCGATGTC GATCCAGCCT CGACCGGCGG CGTGCCGGTT
CAAGGCAAGC TGTCCTTCTT CGACAATAGC GTGGACACCT CCTCGGGGAC TATTCTCGTC
AAGGCAGAGT TTCAAAACGA CAAGGGCATT CTTTGGCCCG GACAGAGCGC CAATGTTACT
GTTCGCTTCC AGACCGAAGA CCGTAACATC CTCGTGCCAA CTGTCGCGGT TCGCCCCGGC
GCTGAAGGCT TCTTTGTCTA TACGGTCAAT GGCGATAGCA AGGTCAAGGC GACCAAGGTT
TCCGTCCTGC GTGCCAATGG CGACATGACG GCGATTGCCT CGGGTCTCAA GGAAGGCGAT
CACGTCGTGG TCGAAGGCCA GGTGCAGCTT GCCGACGGCC AGACTGTTCT GGAACAGTTT
GCCGGCCAGA AAGTGGCTGA AAACGAGCCG AAGGATATCA CCCGATGA
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| Protein sequence | MKKFWTASSI IAILAVGGWI YRDQIPYLDK VPFLSQASQT AGHKPGTEQA TAQANGQPAG
QEAGKPAGQG SGQGSGQGNG KSGGRRNGGP ASVKTVAVSM GNLPMDATAT GWAEAEDTTT
LAALKSGLLQ DVIAKDGQEV KAGDLIARLD DRIAKATVDK DQANIVSDQA SLAEYEAALT
RAESLLKQNA QSQQAYEQAK ASRDSAAAKV DADKATLASD MVDLEHMKIR APFDGRLGSI
QLSIGAYVSA GTAIVSITRY NPIYVKFQMA ERYLPQLHQA FAGKDVVVDV DPASTGGVPV
QGKLSFFDNS VDTSSGTILV KAEFQNDKGI LWPGQSANVT VRFQTEDRNI LVPTVAVRPG
AEGFFVYTVN GDSKVKATKV SVLRANGDMT AIASGLKEGD HVVVEGQVQL ADGQTVLEQF
AGQKVAENEP KDITR
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