Gene Avi_1350 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_1350 
Symbol 
ID7389092 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011989 
Strand+ 
Start bp1128866 
End bp1129501 
Gene Length636 bp 
Protein Length211 aa 
Translation table11 
GC content61% 
IMG OID643650763 
Producthypothetical protein 
Protein accessionYP_002548969 
Protein GI222148012 
COG category[S] Function unknown 
COG ID[COG5448] Uncharacterized conserved protein 
TIGRFAM ID[TIGR02217] conserved hypothetical protein TIGR02217 


Plasmid Coverage information

Num covering plasmid clones1 
Plasmid unclonability p-value0.00122834 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCAACCG CCTTTCACGA GGTGCGCTTT CCGCTGCGCG TGTCGCTCTC GACCAGCGGC 
GGGCCGGTGC GGCGCACGGA TATTGTCAAC CTGTCGAATG GCCGCGAAGT GCGCAACCAG 
CGCTGGGCCA ATTCGCGCCG CAGCTATGAT GCCGGGTCGG GGGTGAAATC GCTTGCCGAT 
CTCTACACGG TGCTGGAGTT TTTCGAGGCG CGTGGCGGCC AGATGGCCGG GTTCCGGTTT 
CGAGATCCGC TGGATTCCAA TTCCGCCGGG CCGGGGCGGG CCGTGAGTGC TGAAGACCAA 
AAGATCGGCA CCGGCGATGG CGTGACCGCC AGCTTTCAAC TGGTCAAGAC CTATGGCGAT 
GCCGGTGGCG GCTGGAGCCG CAGCATTGCC AAGCCAGTTG ATGGCACCGT GCTGATTTCG 
GTGGATGGCG TGCCGGTCAA CGGTTTCAAC TGCGATAGCA CCACCGGGCT AGTGTCCTTC 
AATCAGGATT TTATTCCTGC CTCCGGTGCC GTCATCCGGG CGGGCTTTCA ATTCGATGTG 
CCGGTGCGTT TCGATACCGA CCGGATCGAA ATCAATCTCG AAGCCTTCAA TGCTGGCAGC 
ATTCCTTCGA TTTCGCTGAC GGAGATCATT CCATGA
 
Protein sequence
MATAFHEVRF PLRVSLSTSG GPVRRTDIVN LSNGREVRNQ RWANSRRSYD AGSGVKSLAD 
LYTVLEFFEA RGGQMAGFRF RDPLDSNSAG PGRAVSAEDQ KIGTGDGVTA SFQLVKTYGD 
AGGGWSRSIA KPVDGTVLIS VDGVPVNGFN CDSTTGLVSF NQDFIPASGA VIRAGFQFDV 
PVRFDTDRIE INLEAFNAGS IPSISLTEII P