Gene Avi_1296 details

Gene Information

• Locus tag: Avi_1296
• ID: 7387662
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: +
• Start bp: 1084868
• End bp: 1086811
• Gene Length: 1944 bp
• Protein Length: 647 aa
• Translation table: 11
• GC content: 61%
• IMG OID: 643650723
• Product: ABC transporter nucleotide binding/ATPase protein
• Protein accession: YP_002548929
• Protein GI: 222147972
• COG category: [V] Defense mechanisms
• COG ID: [COG1136] ABC-type antimicrobial peptide transport system, ATPase component

Plasmid Coverage information

• Num covering plasmid clones: 9
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCCCTGC TTGAGCTGAA GAATCTCACC CGTATCTATC GCTCCGGGGA GCAGGATGTC 
GCCGTCCTCA AGAGTGTCAA TCTCAGCATC AATCGCGGCG AAATGGTCTC GATCATCGGG 
CCATCAGGGT CGGGAAAATC GACGCTGATG AATATTCTCG GCCTGCTCGA CCGGCCGAGT 
AGCGGCACGT ATGAGATCGA TGGCAAGCGT ACCGACCAGT TGGACAGCGA CGCGCTGTCG 
GCGCTTCGGC GTGAGCATTT CGGCTTCATC TTCCAGCGCT ATAACCTGCT CTCGGATCTG 
ACGGCGCTTG GCAATGTGGA AGTGCCAGCG ATCTATGCCG GGATTTCGCC TTCGGACCGC 
CGCAGCCGGG CGACCAAAAT CCTGCAAAGG CTGGGCATGG GCGAACGGCT GCGTCACCGG 
CCGGGGCAAT TGTCCGGCGG TCAGCAGCAG CGTGTGTCCA TCGCCCGCGC GCTGATCAAT 
GGCGGCGAGG TGATCCTGGC CGATGAACCG ACCGGCGCGC TCGACAAGCA TAGCGGCGAG 
GAAGTGCTGC GCATTCTCGA CGAATTGCAC GCTGAGGGCC GCACCATCAT CATCGTCACC 
CACGATCCGG GCGTTGCTGC GCGCGCGGAA CGGGTGATCG AGATTGCCGA TGGCGAGATC 
ATCGCCGACC GCCGCCAGGA TAAGCCGGTG CTGGTGCGTG AAAACACCCT GCCATCCACG 
GCCAAGCCGC ATCGTTTCCC CGGTCTCGAC CGGCTGGGCG AAGCCTTCAT GATGGCGGTC 
AGGGCGCTTG CCTCGCATCG GCTGCGCACT TTCCTGACCA TGCTGGGGAT TATCATCGGC 
ATCGCCTCGG TGGTGTCAGT GGTGGCGCTC GGGGCTGGCA CCCAGCAGAA AGTGCTCTCC 
AACATCAACG GGCTCGGCAC CAATACGCTG GAGATTTTCC CCGGCAAAGG ATTTGGAGAT 
ACCCGTTCAG GAAAGATCAC CACGCTGAAG GTCGGCGATG CCGATGCGCT GGCCCGGCTC 
TCCTATGTTT CTGCCGTAAC CCCGACCGTT TCTACCTCAG GCACGGTGCG CTATGGCGCC 
ACTGTCGCCA ATGTGCTGGT CAACGGCGTC GGCGATCAGT ATTTCACCGC CAAGGGTTCC 
AAGCTGCTGG CCGGGCGGCT GTTCGACCAT GCAAGTGTCG TTGCCATGAC CCAGGAGGCG 
GTGATCGACC AGAATGCCGC AAAGGCGCTG TTTGGCGACG ATTCGGCCAG GGCGCTTGGC 
CATACGGTGT TCCTGACCGA CGTGCCGGTG CGGATCGTTG GCGTCATCGA GGCCCAGCAA 
GGCGGCTTCG GTTCGAACTC CAATCTACAG GCCTATCTGC CCTATAGCAG TGTCCAGGCC 
CGATTCCTTG GCGATCTGTC GCTGCGCAGC ATCACCGTCA GGTTGGACGA CAGCGTCGAT 
AGTTCCGTGG CCGAAAGCGC CGTTACCACC TTTCTCGCTG GCCGCCACGG CGAACAAGAC 
TTCTTCATCC TCAACACCGA CGACATCCGC AAGACCATTG TCAGCACTGC TCAGACCCTG 
ACGTTGCTGG TGGCGGCGAT TGCAGTGATC TCGCTGATCG TCGGCGGCAT TGGGGTGATG 
AATATCATGC TGGTTTCGGT GTCCGAACGG GTCAGCGAGA TCGGCGTGCG CATGGCGGTC 
GGGGCGCGCC GCCAGGATAT TCTCCAGCAA TTCCTGATCG AGGCGGTATT GGTCTGCCTG 
ATCGGCGGCG GCCTCGGCCT TGGTTTTGCG CTGTCGATCG GCTTTCTCTT TAGCCTGCTG 
GTCAAGGATT TCCAGCTGGT CTATTCCACC ACCTCCATGG TGGCAGCCTT CAGCTGCTCG 
TGCCTGATCG GCCTCGTTTT CGGCTTCATG CCCGCCCGCA ATGCGTCAAG GCTCGATCCG 
GTGGCGGCAC TGTCAAAGGA TTGA 

 

Protein sequence

MALLELKNLT RIYRSGEQDV AVLKSVNLSI NRGEMVSIIG PSGSGKSTLM NILGLLDRPS 
SGTYEIDGKR TDQLDSDALS ALRREHFGFI FQRYNLLSDL TALGNVEVPA IYAGISPSDR 
RSRATKILQR LGMGERLRHR PGQLSGGQQQ RVSIARALIN GGEVILADEP TGALDKHSGE 
EVLRILDELH AEGRTIIIVT HDPGVAARAE RVIEIADGEI IADRRQDKPV LVRENTLPST 
AKPHRFPGLD RLGEAFMMAV RALASHRLRT FLTMLGIIIG IASVVSVVAL GAGTQQKVLS 
NINGLGTNTL EIFPGKGFGD TRSGKITTLK VGDADALARL SYVSAVTPTV STSGTVRYGA 
TVANVLVNGV GDQYFTAKGS KLLAGRLFDH ASVVAMTQEA VIDQNAAKAL FGDDSARALG 
HTVFLTDVPV RIVGVIEAQQ GGFGSNSNLQ AYLPYSSVQA RFLGDLSLRS ITVRLDDSVD 
SSVAESAVTT FLAGRHGEQD FFILNTDDIR KTIVSTAQTL TLLVAAIAVI SLIVGGIGVM 
NIMLVSVSER VSEIGVRMAV GARRQDILQQ FLIEAVLVCL IGGGLGLGFA LSIGFLFSLL 
VKDFQLVYST TSMVAAFSCS CLIGLVFGFM PARNASRLDP VAALSKD