| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_1199 |
|---|
| Symbol | |
|---|
| ID | 7388505 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | - |
|---|
| Start bp | 1010300 |
|---|
| End bp | 1010836 |
|---|
| Gene Length | 537 bp |
|---|
| Protein Length | 178 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 643650653 |
|---|
| Product | pyrE protein |
|---|
| Protein accession | YP_002548859 |
|---|
| Protein GI | 222147902 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0461] Orotate phosphoribosyltransferase |
|---|
| TIGRFAM ID | [TIGR00336] orotate phosphoribosyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCGGAA ATGCGCCCTC CCCATTGGCG GAACTCGCCA GACAAATAGC AGCCACGGCG
ACCCTTGAGG GCGAATTCGT GTTGCGCTCC GGCCAGGTCT CCAACCGTTA TTTCGATAAA
TATCGCTTCG AGGGAAACCC GGTTCTCTTG AGAGAACTGG CAAAGGCCAT GGCCTCCCTT
CTTCCCCCCA CAACCGAAAT CCTTGCTGGT CTGGAACTCG GCGGCATTCC GCTTGTCACC
GCGATTTCGT TGGAAACAGG ACTTCCCGCC GCCTTTATCC GGAAGGAGGC AAAAACCTAT
GGAACCTGCC GCGCCATCGA AGGACAGGAC GTCAGAGGCC GCCGGATCAC CTTCATAGAG
GACGTGATCA CCACAGGCGG CGCCGTCGCC GATGCTCATC GATTGGCCTT GGCGCAACAA
GCAGACATTC TTGCCGTCGT TTGCGCAATC TGGCGCGGCA ACGGCAATCC TCACGTCGCA
AACGCGCCTG ACCTTCCGGT ATTTCCGGTT TTCACTGCGG CAGATCTGGA GAAGTGA
|
|---|
| Protein sequence | MTGNAPSPLA ELARQIAATA TLEGEFVLRS GQVSNRYFDK YRFEGNPVLL RELAKAMASL
LPPTTEILAG LELGGIPLVT AISLETGLPA AFIRKEAKTY GTCRAIEGQD VRGRRITFIE
DVITTGGAVA DAHRLALAQQ ADILAVVCAI WRGNGNPHVA NAPDLPVFPV FTAADLEK
|
|---|
| |