Gene Avi_1167 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_1167 
Symbol 
ID7386227 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011989 
Strand
Start bp989874 
End bp991547 
Gene Length1674 bp 
Protein Length557 aa 
Translation table11 
GC content60% 
IMG OID643650633 
Producthypothetical protein 
Protein accessionYP_002548839 
Protein GI222147882 
COG category[R] General function prediction only 
COG ID[COG2194] Predicted membrane-associated, metal-dependent hydrolase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.105391 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGAGTTATC GTGCCGGAAA AGCCAGCCTC TTCAGGTCCA GACCGCAGAT CGGCAGCGTG 
ACGCTGTGCG TCGTTACCAC GGCCTATTTG CTGGCGGTCA CCAACACCAC GTTCTGGATC
AAGGCGCATA GCTATCTGGC CGATACCTCA CCATTGGCCT TCGGCCTGTT TGCGCTCGGC
ATTTCCGCCA TGTGCCTGGC GATCCTCACG CTGTTCTCAG CAAAATACCT GGTAAAGCCG
GTGCTGATCT TCCTGGTGAT CACCGCCTCG CTATCGTCAT GGTTTACCGA CCAGTTCGGC
ACGATCATCG ACCGGGAAAT GATCCGCAAT GCCGCGGTTT CGACCGGAGC GGAGACGGCC
CATCTGCTGA CGCCCCGTTT TATGATGCAT GTGGTTCTGA CCGGTCTTTT GCCCTCGCTG
CTGATCGTCT GGTTGCGGGT TCGCCACCGA CCCTTCCTCA GCAAGTTTGC CCATAATGCT
GGCATCATCA TCGCCTGTGT CGCGGTGTTT GCCGCCGCCG CCTTCAGCGA TTACCGAACC
TTTGCAGGCG TCGGGCGCGC CCATAATGAT ATTCTCGACC GGCTGAACCC GTTCCTGCCG
ATTGCCAATG CCGTGCGCTA TACAATCGAC GCCAACCGGG ACCGGAATAT CGTCGCCCAA
CCGATCGGCA CCGACGCCCA CCGGATCAAT ACCGCCGCCC TCACCAAGCC GCGCGTCACT
GTCATCGTTG CCGGGGAAAC CGCACGGGCC GCGAATTTCT CGCTGGGCGG CTATCAGCGC
GACACCAATC CACAGCTAAA AGCCCGGGGC GTGACCTATT TCAGCAACAC GACCAGCTGC
GGCACGGCAA CCGCCGTCTC CATCCCCTGC ATGTTCTCCG ACCTGACACG GGCAAGCTAT
AGCCACCGCA AGGCTGCCGA ACGGCAAAAC CTGCTGGATG TGCTGGGCTA TGCCAAGGTC
TCCGTGACAT GGCTGGACAA TGACACCGGC CATTACAATG TCGCCGACCG GGTGCCGTAT
ACGTTTCTGC CGCCGTCAGC CGATCCGCGC TTTTGCAAAG ATGGCGAGTG TCTGGATGGG
ATCCTGACCG ACAAGCTGAA TGGCTGGCTT GACGGCATCA AGGGCGATAG CGTGCTGGTG
CTGCATCAGC TGGGCAGCCA CGGCCCTGCC TATTATGCCC GCTATCCCGA GGAATTTCGC
AGGTTCCAGC CGGATTGCCG CGCCAATGAT TTTGGCAAAT GCAGCCCGCA GGAAATCCGC
AACGCCTATG ACAACACTAT TCTCTACACA GACCATATCG TTGCGCAGGT GATCGACACG
CTGAAACAAC GGTCGGGCAC GTTGGCTGGC GCCGTCGTCT ATCTGTCCGA CCATGGCGAG
TCGCTCGGCG AAAACGGTAT CTACCTGCAT GGCATGCCCT ATATGGTGGC GCCAACCGAA
CAGACCCATG TGCCGCTGCT GTTCTGGCTG GCCGACGATC TGGCCAAGGA TGCCGGATAC
GACCGGGGCT GCCTGGCAAA AACCACAGCC GAACCGCGCT CCCATGACAA TCTGTTCCAC
AGCGTGCTGG GCCTGATGGA TGTGTCGACC AAAGTGTACA ATCCCGCCCT CGATGTGTTT
TCCGGCTGCC GCCGTGCGCC GGGAACGGTG GCGGCGGCTG AGCCGGTCAA GTAA
 
Protein sequence
MSYRAGKASL FRSRPQIGSV TLCVVTTAYL LAVTNTTFWI KAHSYLADTS PLAFGLFALG 
ISAMCLAILT LFSAKYLVKP VLIFLVITAS LSSWFTDQFG TIIDREMIRN AAVSTGAETA
HLLTPRFMMH VVLTGLLPSL LIVWLRVRHR PFLSKFAHNA GIIIACVAVF AAAAFSDYRT
FAGVGRAHND ILDRLNPFLP IANAVRYTID ANRDRNIVAQ PIGTDAHRIN TAALTKPRVT
VIVAGETARA ANFSLGGYQR DTNPQLKARG VTYFSNTTSC GTATAVSIPC MFSDLTRASY
SHRKAAERQN LLDVLGYAKV SVTWLDNDTG HYNVADRVPY TFLPPSADPR FCKDGECLDG
ILTDKLNGWL DGIKGDSVLV LHQLGSHGPA YYARYPEEFR RFQPDCRAND FGKCSPQEIR
NAYDNTILYT DHIVAQVIDT LKQRSGTLAG AVVYLSDHGE SLGENGIYLH GMPYMVAPTE
QTHVPLLFWL ADDLAKDAGY DRGCLAKTTA EPRSHDNLFH SVLGLMDVST KVYNPALDVF
SGCRRAPGTV AAAEPVK