Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_1167 |
Symbol | |
ID | 7386227 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | - |
Start bp | 989874 |
End bp | 991547 |
Gene Length | 1674 bp |
Protein Length | 557 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 643650633 |
Product | hypothetical protein |
Protein accession | YP_002548839 |
Protein GI | 222147882 |
COG category | [R] General function prediction only |
COG ID | [COG2194] Predicted membrane-associated, metal-dependent hydrolase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.105391 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGAGTTATC GTGCCGGAAA AGCCAGCCTC TTCAGGTCCA GACCGCAGAT CGGCAGCGTG ACGCTGTGCG TCGTTACCAC GGCCTATTTG CTGGCGGTCA CCAACACCAC GTTCTGGATC AAGGCGCATA GCTATCTGGC CGATACCTCA CCATTGGCCT TCGGCCTGTT TGCGCTCGGC ATTTCCGCCA TGTGCCTGGC GATCCTCACG CTGTTCTCAG CAAAATACCT GGTAAAGCCG GTGCTGATCT TCCTGGTGAT CACCGCCTCG CTATCGTCAT GGTTTACCGA CCAGTTCGGC ACGATCATCG ACCGGGAAAT GATCCGCAAT GCCGCGGTTT CGACCGGAGC GGAGACGGCC CATCTGCTGA CGCCCCGTTT TATGATGCAT GTGGTTCTGA CCGGTCTTTT GCCCTCGCTG CTGATCGTCT GGTTGCGGGT TCGCCACCGA CCCTTCCTCA GCAAGTTTGC CCATAATGCT GGCATCATCA TCGCCTGTGT CGCGGTGTTT GCCGCCGCCG CCTTCAGCGA TTACCGAACC TTTGCAGGCG TCGGGCGCGC CCATAATGAT ATTCTCGACC GGCTGAACCC GTTCCTGCCG ATTGCCAATG CCGTGCGCTA TACAATCGAC GCCAACCGGG ACCGGAATAT CGTCGCCCAA CCGATCGGCA CCGACGCCCA CCGGATCAAT ACCGCCGCCC TCACCAAGCC GCGCGTCACT GTCATCGTTG CCGGGGAAAC CGCACGGGCC GCGAATTTCT CGCTGGGCGG CTATCAGCGC GACACCAATC CACAGCTAAA AGCCCGGGGC GTGACCTATT TCAGCAACAC GACCAGCTGC GGCACGGCAA CCGCCGTCTC CATCCCCTGC ATGTTCTCCG ACCTGACACG GGCAAGCTAT AGCCACCGCA AGGCTGCCGA ACGGCAAAAC CTGCTGGATG TGCTGGGCTA TGCCAAGGTC TCCGTGACAT GGCTGGACAA TGACACCGGC CATTACAATG TCGCCGACCG GGTGCCGTAT ACGTTTCTGC CGCCGTCAGC CGATCCGCGC TTTTGCAAAG ATGGCGAGTG TCTGGATGGG ATCCTGACCG ACAAGCTGAA TGGCTGGCTT GACGGCATCA AGGGCGATAG CGTGCTGGTG CTGCATCAGC TGGGCAGCCA CGGCCCTGCC TATTATGCCC GCTATCCCGA GGAATTTCGC AGGTTCCAGC CGGATTGCCG CGCCAATGAT TTTGGCAAAT GCAGCCCGCA GGAAATCCGC AACGCCTATG ACAACACTAT TCTCTACACA GACCATATCG TTGCGCAGGT GATCGACACG CTGAAACAAC GGTCGGGCAC GTTGGCTGGC GCCGTCGTCT ATCTGTCCGA CCATGGCGAG TCGCTCGGCG AAAACGGTAT CTACCTGCAT GGCATGCCCT ATATGGTGGC GCCAACCGAA CAGACCCATG TGCCGCTGCT GTTCTGGCTG GCCGACGATC TGGCCAAGGA TGCCGGATAC GACCGGGGCT GCCTGGCAAA AACCACAGCC GAACCGCGCT CCCATGACAA TCTGTTCCAC AGCGTGCTGG GCCTGATGGA TGTGTCGACC AAAGTGTACA ATCCCGCCCT CGATGTGTTT TCCGGCTGCC GCCGTGCGCC GGGAACGGTG GCGGCGGCTG AGCCGGTCAA GTAA
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Protein sequence | MSYRAGKASL FRSRPQIGSV TLCVVTTAYL LAVTNTTFWI KAHSYLADTS PLAFGLFALG ISAMCLAILT LFSAKYLVKP VLIFLVITAS LSSWFTDQFG TIIDREMIRN AAVSTGAETA HLLTPRFMMH VVLTGLLPSL LIVWLRVRHR PFLSKFAHNA GIIIACVAVF AAAAFSDYRT FAGVGRAHND ILDRLNPFLP IANAVRYTID ANRDRNIVAQ PIGTDAHRIN TAALTKPRVT VIVAGETARA ANFSLGGYQR DTNPQLKARG VTYFSNTTSC GTATAVSIPC MFSDLTRASY SHRKAAERQN LLDVLGYAKV SVTWLDNDTG HYNVADRVPY TFLPPSADPR FCKDGECLDG ILTDKLNGWL DGIKGDSVLV LHQLGSHGPA YYARYPEEFR RFQPDCRAND FGKCSPQEIR NAYDNTILYT DHIVAQVIDT LKQRSGTLAG AVVYLSDHGE SLGENGIYLH GMPYMVAPTE QTHVPLLFWL ADDLAKDAGY DRGCLAKTTA EPRSHDNLFH SVLGLMDVST KVYNPALDVF SGCRRAPGTV AAAEPVK
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