| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_1160 |
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| Symbol | |
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| ID | 7386220 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 980307 |
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| End bp | 982199 |
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| Gene Length | 1893 bp |
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| Protein Length | 630 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 643650626 |
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| Product | hypothetical protein |
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| Protein accession | YP_002548832 |
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| Protein GI | 222147875 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG3914] Predicted O-linked N-acetylglucosamine transferase, SPINDLY family |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.795058 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | CTGGACCAGG CGCTGGCGCT GGCCGATGCG ACCGATGAAA CGGACCCGGA TCGGATCGCT
GATCTGGATT TCCTCACCGG CGGCATCCGG TTGAAGCAAG CCGACAGGGC CGGGGCGGCC
AAGGCTTTTC TGAAGGTGGC ACACAGTGCA TCGGCCAAGG CGAATGATTG TCTGGTGCTG
GCCATTGATC TGATGTTTTC CGAGAGCCAG TTCGAGCCGC TTGCCGGGCT TGTCGATCTC
GTGGCAAAAC GGCTTGCCGA TCATCAGACA GCGGTGTTCA AGGTTGTGAC TGCCTTGTCC
ACGCTTGGAC GGCTCGGCGA GGCCCATGCG ATTATCGGCG CACTGGATTG TGAAAAACGT
CCGCATCTCA ATCTTCTCAT TGCTTTCATT GCGACCTCGA GGGACAGGGA CGGGCTCTAT
GCCGTTCTGC TGGCCAATGC TGTGCGCTAC CCCAACAATG CTTTCCTGCT TGCCGCTCTG
GCGCTACGCG CCCATGAGCG CTGCGATTTC GCTGTGACGG ATCATTTTGC GGCCAGGTTG
CGGGAACCGG GTTTTGGGGA GCGTCTGGCA GCTTTTGAGC TGGGTTTGGC AAGGATCATC
CGCACCGATG ATGAGCGTGA GGCGGCAAAG CCGTTTTTCG GAGCGCTCGA AGTCATGCGT
CACCGTGCGC AAGGGGCAGA ACCTCTCGCG CGCCGGGCGA TCCGCCCGCA GGGCCGACTT
CGCATCGCCT ATTTTTCCAG CGATCTTCGC CTTCATCCGA TGATGACGTT GATCTATGAC
GCCCTGTTGC AGCATGACCG TTCGCGGTTC GATATTATCC TGCTGTGCCA TTCTCCCGTC
GGTTGCGAGG CTTATCAATC GACGTGGCCG GAGCAATTGC GCGGCGAAGT CGTCCGGGTT
CGCGACCTGT CCAGCGCCGC CATCATCGAA TGGATACGCC AAAATGAGGT GGATATCCTG
GTGGATCTGA ATGGGCATAC GGCGCGGGCA AGGCTTGATG TCGTTGACCT TTGCGACGCG
CCGATCAAAG TTACCTATAT GGGATTTCCC GGTGCGGTGA TGGGGGTCGA TCTGGACTAT
GCGATCACCG ATCCGATCAT CACGCCCGAT AGCAGCAAGC CCTATTATCA GGAAAAGCTC
TGCCGCTTGC CGGAAACCTA TATGGCCAAC AGCGTGTCTA GCCGGACTTG GCAGCAGAGG
GCAAGCCGCG AGTCGGTTGG GTTGCCATCT GGTCGGTTTG TGTTCGGCTC GTTCAACGGG
TCGCAGAAGA TCGACCGTCA GGCGATCCGT ATCTGGGCGC AGATTCTGAA GCGTGTGCCT
GAGGCCATCC TTTCCATAAG CTGCGCGCGC GTTGCGGTGG CGGATAATCT GCGCGTCGCC
TTCGCGCAGC AGGGCATCGA TGCCGGGCGA TTGATCTTCT TCGATAATTG CCCGAGTGCG
GAGTTTCTGG CCCGGATGTC GGCAACCGAT CTGGTGCTCG ACACCTTTAT TTACAACGGC
CACACCACCA CATCCGATGC GCTGTGGGCA GGGGTTCCTG TCCTGACGAA GAAAGGCAAG
GCGTTCGCTG GTCGTGTTTC CGAAAGCCTG CTAAAGGCCG TCGGCCTGCC GGAACTGGTG
GCGCAGGATG CGGATGATTT TATCGCCCGC GCCGTTGATC TTGCCGAGCA TCCAGACCGG
TTGGAAGACC TTCGAGCACG GCTGCGCACC CAGATTTTAA CCGCGCCGCT GTTTGATGCC
GAGCGCTTCA CACGCCATCT GGAGCGTGGC TACGAGATGA TGGCGGAGCG GGCGCGGGCG
GGCCTTGCGC CCGATCATCT CGATGTTCCG GCCTTGCCTG CGCGCAAGGA GCCGTTTTTT
ACGCCGCAAG AGGTAGGCCA TGGCAACGTT TGA
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| Protein sequence | MDQALALADA TDETDPDRIA DLDFLTGGIR LKQADRAGAA KAFLKVAHSA SAKANDCLVL
AIDLMFSESQ FEPLAGLVDL VAKRLADHQT AVFKVVTALS TLGRLGEAHA IIGALDCEKR
PHLNLLIAFI ATSRDRDGLY AVLLANAVRY PNNAFLLAAL ALRAHERCDF AVTDHFAARL
REPGFGERLA AFELGLARII RTDDEREAAK PFFGALEVMR HRAQGAEPLA RRAIRPQGRL
RIAYFSSDLR LHPMMTLIYD ALLQHDRSRF DIILLCHSPV GCEAYQSTWP EQLRGEVVRV
RDLSSAAIIE WIRQNEVDIL VDLNGHTARA RLDVVDLCDA PIKVTYMGFP GAVMGVDLDY
AITDPIITPD SSKPYYQEKL CRLPETYMAN SVSSRTWQQR ASRESVGLPS GRFVFGSFNG
SQKIDRQAIR IWAQILKRVP EAILSISCAR VAVADNLRVA FAQQGIDAGR LIFFDNCPSA
EFLARMSATD LVLDTFIYNG HTTTSDALWA GVPVLTKKGK AFAGRVSESL LKAVGLPELV
AQDADDFIAR AVDLAEHPDR LEDLRARLRT QILTAPLFDA ERFTRHLERG YEMMAERARA
GLAPDHLDVP ALPARKEPFF TPQEVGHGNV
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