Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_1125 |
Symbol | cytR |
ID | 7386196 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | - |
Start bp | 952540 |
End bp | 953571 |
Gene Length | 1032 bp |
Protein Length | 343 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 643650601 |
Product | transcriptional repressor LacI family |
Protein accession | YP_002548808 |
Protein GI | 222147851 |
COG category | [K] Transcription |
COG ID | [COG1609] Transcriptional regulators |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.00370144 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGGGGAAAA AAATCAGGGC GTCGGGCAAT CGCCTGACAT TGAACGAAGT TGCGGAGAAA GTCGGCGTTA GCCCGATTAC CATTTCAAGG GCGCTGAACA AGCCGGAAAA AGTCTCTCCA GGACTGCGCG AAACGATTCT GAAAATCGTC GAGGAACTCG GCTATGTGCC CGACTACGCC GCAAGGGCCT TGGCGAGCAG AAACAGCAAT ACGATCGGCG TCCTGTCCTC GTTGCTGGGT ACCAATATTT TCCCCAGGGT CATGAAAGGC ATCGAGGATC GGGCCCGGGG CACGGGCCTG CGCATCCAAT ATGTCAATAC GCGCTACGAT CCCGATGAAG AGCTTTACCA GCTCAGACAG TTTTTCGCGC AGAAGCCGAC AGGCATCATC ATTGGTGGCG TGCAGGTCGA TCCGCGGGTG ACGGAAATGC TGCATGATGC GCCCTGCCCT GTCGTACAGT TTATCGATAT CAGCTATCCG CCGGTCGATA TGGCCATCGG CATCAACAAT GCCGCCGCCG CCGATGTCGC CATCCGGCAT CTGCTGGATG TGGGCTATCA CCGGATCGCA TTCTGCTCGA CCGGTACCGA TATTCCGGTG CGGATGCGGC TGGAGAGCTA TCGCAACAGA CTGAGGGAAG CAGGGCTTTA CAATCCTGAT CTCGAAGTCA ATGTGGACGC GAACGATTGC TTCGGATCAG CGGGCAAGAC CCTCGACACA TTGTTTGCCG CCGATCCCGA GGTCGATGCC GTCCTATGTT GTCACGACGA CCTGGCGCTT GGCCTGCTGT TCGAATGCCA GCGGCGCGGC ATCAGTATTC CCGACCGACT CGGACTGTGC AGTTTCACCG ACCTCGATTA TTGCGCCCAC ACCGTGCCTG GCCTGACGAC GGTGCGCACC CCGCTCTATC AGCTCGGCTA CCGCGCCACC GACATGATCA TCCGCAGCCA GGACAAGAGC CGCCAGAAAC ACACGACGGA TCTCGGTTTC GAGCTGATCG CCCGAGGCTC CACCCGCCGT CCCAAACCAT GA
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Protein sequence | MGKKIRASGN RLTLNEVAEK VGVSPITISR ALNKPEKVSP GLRETILKIV EELGYVPDYA ARALASRNSN TIGVLSSLLG TNIFPRVMKG IEDRARGTGL RIQYVNTRYD PDEELYQLRQ FFAQKPTGII IGGVQVDPRV TEMLHDAPCP VVQFIDISYP PVDMAIGINN AAAADVAIRH LLDVGYHRIA FCSTGTDIPV RMRLESYRNR LREAGLYNPD LEVNVDANDC FGSAGKTLDT LFAADPEVDA VLCCHDDLAL GLLFECQRRG ISIPDRLGLC SFTDLDYCAH TVPGLTTVRT PLYQLGYRAT DMIIRSQDKS RQKHTTDLGF ELIARGSTRR PKP
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