Gene Avi_1081 details

Gene Information

• Locus tag: Avi_1081
• ID: 7389147
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: +
• Start bp: 912699
• End bp: 913367
• Gene Length: 669 bp
• Protein Length: 222 aa
• Translation table: 11
• GC content: 65%
• IMG OID: 643650568
• Product: transcriptional regulator GntR family
• Protein accession: YP_002548776
• Protein GI: 222147819
• COG category: [K] Transcription
• COG ID: [COG1802] Transcriptional regulators

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGCAAAG CCAAGGACGA CACTATAGCC GCGAGGATTG CCCGCGTGTT GGCGCAACGC 
ATCGTGCATG GAGACTTGCA GCCCGGCATT CGGCTGGCAC AGGACCATAT TGCCGAGGAG 
TTTTCGGTAA GCCAGGTGCC GGTGCGGGAG GCCTTCCGGC GTCTGGAGGC GCAGGGCCTC 
GTCATCAGTC TGCCGCGCCG CGGGGTCCGG GTGGCGAGTT TCGATCTGAA ACAGGTGCGT 
GAAGTGGCGG AAATGCGCGC TGCACTTGAA GTGCTGGCGC TGAAGCATGC CGCTCCGCAT 
CTGACGCCCG CGCTGCTAGA CGAAGCGGAG GCCGCGACCT CCGCCTGCGA TCGCGCCGAC 
AATGTCGAGG ATTGGGAGGC GGCCAATCGA CGCTTTCACC GGCTGATCGT TTCCACCTGC 
GATATGCCGC GCCTGTTGAC CGCCATCGAC GACCTGCATG CGGTCAGCGC TCATTTCCTG 
CTGGCAGGCT GGCAAAGTGG CTGGGAGCGC CGCACCGATC ATGACCATCG CGCCATCCTG 
GATGCCTTGC GCCGCAATGC CGTTGGTGAG GCGACAGCCA TCCTGGAGCG GCATGTGCAG 
TGGATTGGCC GGGCGCCCGC GCCGCGCCGC GGTGAGCCGC AGCCGGAGCG TTTTGCGATT 
GTCGGATGA 

 

Protein sequence

MSKAKDDTIA ARIARVLAQR IVHGDLQPGI RLAQDHIAEE FSVSQVPVRE AFRRLEAQGL 
VISLPRRGVR VASFDLKQVR EVAEMRAALE VLALKHAAPH LTPALLDEAE AATSACDRAD 
NVEDWEAANR RFHRLIVSTC DMPRLLTAID DLHAVSAHFL LAGWQSGWER RTDHDHRAIL 
DALRRNAVGE ATAILERHVQ WIGRAPAPRR GEPQPERFAI VG