| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_1080 |
|---|
| Symbol | |
|---|
| ID | 7387159 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | - |
|---|
| Start bp | 911855 |
|---|
| End bp | 912544 |
|---|
| Gene Length | 690 bp |
|---|
| Protein Length | 229 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 643650567 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_002548775 |
|---|
| Protein GI | 222147818 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0637] Predicted phosphatase/phosphohexomutase |
|---|
| TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTGGCT TCGACCTCAC CCTTTTCGAT TGTGACGGCG TGCTCGTCGA TTCCGAAATC
ATTGCCGCAA AGGTGGAATC CAAGCTGCTG ACCGAGGCAG GCTATCCGAT TTCAGTCGAG
GAAATGGGTG AGCGTTTTTC CGGCATGACC TGGAAAAACA TCCTGATGAC CATCGAGAAG
GAAGTGGATA TTCCGCTCTC GGCCAGCCTG ATCGACAAAT CGGAAGCCCT GCTGGACCAG
CGGCTGGCCC GCGAGGTCAA GCTGGTGGAA GGAGTCACCT ACGCCCTGTC ACGTCTGCAG
GGGCCGCGCT GCATTTGCTC CAATTCCTCG TCACAGCGGC TGGACATGAT GCTGACCAAG
GTCGGCCTCA AGGAGTTTTT CGCGCCGCAT GTCTATTCCG CCAAGGATCT CGGCGCGGAT
CGGGTCAAGC CGAAGCCGGA TATCTATCTG CATGGCGCCG CCCAGTTCAA CGTCAAGCCG
CAAAATTGCG TGGTGGTGGA AGACAGCGTG CATGGCATCC ATGCCGCCCG CGCCGCTGGA
ATGCGGGTTG TCGGCTTTAC CGGCGCCTCC CACACCTACC CCTCCCATGC CGACCGCCTG
ACCGAAGCCG GGGCCGAAAC CGTGATCGCC CGAATGATGG ACCTGCCAGC GGTCATAGAC
GCCATGGCCG AATGGGACCA TGTGATCTAA
|
|---|
| Protein sequence | MAGFDLTLFD CDGVLVDSEI IAAKVESKLL TEAGYPISVE EMGERFSGMT WKNILMTIEK
EVDIPLSASL IDKSEALLDQ RLAREVKLVE GVTYALSRLQ GPRCICSNSS SQRLDMMLTK
VGLKEFFAPH VYSAKDLGAD RVKPKPDIYL HGAAQFNVKP QNCVVVEDSV HGIHAARAAG
MRVVGFTGAS HTYPSHADRL TEAGAETVIA RMMDLPAVID AMAEWDHVI
|
|---|
| |