| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_1079 |
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| Symbol | |
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| ID | 7387158 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 910891 |
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| End bp | 911817 |
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| Gene Length | 927 bp |
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| Protein Length | 308 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 643650566 |
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| Product | hypothetical protein |
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| Protein accession | YP_002548774 |
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| Protein GI | 222147817 |
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| COG category | [I] Lipid transport and metabolism
[R] General function prediction only |
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| COG ID | [COG1597] Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase |
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| TIGRFAM ID | [TIGR00147] lipid kinase, YegS/Rv2252/BmrU family |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.462642 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGGGTGA CGGTCATTCG CAATCCTGTG GCGGGCGGTG CTCACGCATG GCCTGCCACG
GCCCGTGCCC TTGCGGAGAT TTTTCCCGGC TATTCGCTGG TCGAAACCGT CAAGGGCATG
ACGGGTCCCC AGGTGCGTGC CGCCGTCACG CCGGAAACCG ATCTGGTGCT GGTGGTGGGT
GGCGATGGCA CGGTTGGCCA GGCCGTGGAT GGGCTGCTGA CGTCGCTTTA TCCGAAAACC
GCCTTTGCCT TCTTGCCGGG TGGCACGGGC GCGGATTTTT CCCGTAATTT CGATTGGCCC
GCAACCATTG AGCGCCAATT GCAGGCGATT GCTACGGCCG CCCCGCGCCG TATCGATGTC
GGAGTTCTGC AAAGCCATGT GGGCGGTGGC GAGGTGAAGA CCACGCACTT CGTCAATGTC
TCCAGTACCG GCGTCTCGGG TGAGATCGTC GCGGCGATCG AGGCAAACCG TGGACCCTCG
CGTCTGCCGG CTTTCCTGCG CTACCGGCTG ATGTCATTGG GGCGCATCGC CCGCTACAAG
GGAGCGGCCC TGCGCATTTC GGTGGATGGA AGATGCGTTT ATGACGGCGC GGTTCTTGTG
GCCGCCGTTA CCAATGGCAG TTGGTTTGGC GCCGGAGTGC GCGCCGCGCC GCAGGCTTTG
CTGGACGATG GCCAGCTCGA TCTGGTCTTT GCACGCCATT GCGGCGCCAT TGGCAATCTG
AAGATCTTTG CGGCTTTCGC CAATGGCAGT CCGGCGAATT CGTCCGCGAT CAAGACCCAT
CGCGGCCAGG TGATCGACAT CGAGCCGCAC GGCAAGATCC CCATGGCCGA GGCCGATGGC
GAAGTGATCA GGCCTGGCGC ATTGCGCTTC AGCATTCTGC CGCAAGCGCT CACCGTTCGC
CTCCCGCCAG CAGTGGCGCC TGGGTGA
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| Protein sequence | MRVTVIRNPV AGGAHAWPAT ARALAEIFPG YSLVETVKGM TGPQVRAAVT PETDLVLVVG
GDGTVGQAVD GLLTSLYPKT AFAFLPGGTG ADFSRNFDWP ATIERQLQAI ATAAPRRIDV
GVLQSHVGGG EVKTTHFVNV SSTGVSGEIV AAIEANRGPS RLPAFLRYRL MSLGRIARYK
GAALRISVDG RCVYDGAVLV AAVTNGSWFG AGVRAAPQAL LDDGQLDLVF ARHCGAIGNL
KIFAAFANGS PANSSAIKTH RGQVIDIEPH GKIPMAEADG EVIRPGALRF SILPQALTVR
LPPAVAPG
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