| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_1042 |
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| Symbol | cyoE |
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| ID | 7387129 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 883269 |
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| End bp | 884246 |
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| Gene Length | 978 bp |
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| Protein Length | 325 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 643650537 |
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| Product | protoheme IX farnesyltransferase |
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| Protein accession | YP_002548745 |
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| Protein GI | 222147788 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0109] Polyprenyltransferase (cytochrome oxidase assembly factor) |
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| TIGRFAM ID | [TIGR01473] protoheme IX farnesyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACAGGTC AGGACAGCAT AATGGCAGCC ATAGACAACA GCAACATCAT CGGTCTGGAC
AGTGAGATCT GTCTGTCCGA AGCGGGCGCG AAGGATTTCT TCGCGCTTTT AAAGCCGCGG
GTGATGTCGC TTGTGGTGTT CACGGCCTTC GCAGGTCTGG TGCTGGCACC AGGCACGATC
AACCCCATTC TGGGTGTCAT TGCCATCCTG TGCATTGCGG TTGGGGCTGG CGCCTCCGGC
GCTCTCAATA TGTGGTATGA TGCCGATATC GATGCGGTGA TGACCCGCAC GGCGCGCCGC
CCCATCCCGG CAGGCCGTAT CCGTCCGCAG GAGGCGCTGG CCTTCGGCAT CACGCTGTCG
GTCTTTTCGG TCTCGATTCT TGGCCTCGCG GTCAATTGGT TCGCCGCCGC CTTTCTGGCC
TTCACCATCC TGTTTTACGC TGTCGTCTAT ACGATGTGGC TGAAGCGCTC GACCCCGCAG
AATATCGTCA TTGGCGGCGC ATCGGGTGCC TTTCCGCCGA TGATCGGCTG GGCCTGCGTG
ACTGGTGGCG TGTCGCTGGA TAGCGTCATT CTGTTCATGG TGATCTTCCT GTGGACGCCA
GCACATTTCT GGGCCCTGGC GCTCTACAAG ATGCGCGATT ACGGCTCGGT CGGCGTGCCG
ATGATGCCGA ATGTGGCAGG CGAAACCTCC ACCAAGCGGC AGATGTTCGT CTATGCCGTG
CTGACCGGGG TCTTTGCCGT GGCACCGGCT TTTACCGGGC TTGCTTCGCT CTGGTACGGG
CTGGTGGCTG GTGTGCTGAG TGCCGTCTTT GTTGCCTGCT CCGTTGCCGT TTGGCGGATG
CGAGAGGGCG ATGAACGCAT GGCACCGGCC CGCAAAATGT TTGCCTATTC GATCTTCTAT
CTGTTCGCGG TGTTTTCAGC CCTGCTGGTC GATCATTATG CGGCGAGTCT TCTCGCCCAT
GCGTCGGGAG CACTGTGA
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| Protein sequence | MTGQDSIMAA IDNSNIIGLD SEICLSEAGA KDFFALLKPR VMSLVVFTAF AGLVLAPGTI
NPILGVIAIL CIAVGAGASG ALNMWYDADI DAVMTRTARR PIPAGRIRPQ EALAFGITLS
VFSVSILGLA VNWFAAAFLA FTILFYAVVY TMWLKRSTPQ NIVIGGASGA FPPMIGWACV
TGGVSLDSVI LFMVIFLWTP AHFWALALYK MRDYGSVGVP MMPNVAGETS TKRQMFVYAV
LTGVFAVAPA FTGLASLWYG LVAGVLSAVF VACSVAVWRM REGDERMAPA RKMFAYSIFY
LFAVFSALLV DHYAASLLAH ASGAL
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