Gene Avi_1029 details

Gene Information

• Locus tag: Avi_1029
• Symbol: soxR
• ID: 7387119
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: +
• Start bp: 873271
• End bp: 873756
• Gene Length: 486 bp
• Protein Length: 161 aa
• Translation table: 11
• GC content: 62%
• IMG OID: 643650527
• Product: redox-sensitive transcriptional activator SoxR
• Protein accession: YP_002548735
• Protein GI: 222147778
• COG category: [K] Transcription
• COG ID: [COG0789] Predicted transcriptional regulators
• TIGRFAM ID: [TIGR01950] redox-sensitive transcriptional activator SoxR

Plasmid Coverage information

• Num covering plasmid clones: 7
• Plasmid unclonability p-value: 0.352753
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCGGATGC AGGGTTTGAG CGTCGGTGAA TTGGCGGAGC GCAGCGGCGT TGCGGTTTCG 
GCTTTGCATT TTTACGAGCG CAAGGGCCTG ATTCGCGCCC GGCGCACCAG CGGCAACCAG 
CGGCGCTACG ACCGGGACGT GCTACGCCGC GTGGCAATTA TTCGGGCGGC GCTAGCGCTC 
GGCATTCCCT TGAAGGAGGT CGCGGCGATC ATGGCGGATC TGCCGCAAGG CCAGACGCCG 
GGCCGGGAGG ACTGGCGCCG GATTGCGACA CGTTGGGCGG ACAGTTTGGA CCGGCGCATC 
GCCATGCTCG GCAAATTGCG CAACGATCTC GACGGCTGTA TCGGCTGCGG TTGCCTGTCG 
ATGACGCATT GCAATATCTT CAATCCCCAG GATATGGCGG GCGAGCGCGG CGAGGGGGCT 
GTATTTCTTC TCGATTCTGA TAGGAACGAA GGGGGAAACC CTGCAGATTC CACAGAGTTG 
CCATAA 

 

Protein sequence

MRMQGLSVGE LAERSGVAVS ALHFYERKGL IRARRTSGNQ RRYDRDVLRR VAIIRAALAL 
GIPLKEVAAI MADLPQGQTP GREDWRRIAT RWADSLDRRI AMLGKLRNDL DGCIGCGCLS 
MTHCNIFNPQ DMAGERGEGA VFLLDSDRNE GGNPADSTEL P