Gene Avi_1026 details

Gene Information

• Locus tag: Avi_1026
• Symbol: pdxH
• ID: 7387116
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: +
• Start bp: 869788
• End bp: 870408
• Gene Length: 621 bp
• Protein Length: 206 aa
• Translation table: 11
• GC content: 57%
• IMG OID: 643650524
• Product: pyridoxamine 5'-phosphate oxidase
• Protein accession: YP_002548732
• Protein GI: 222147775
• COG category: [H] Coenzyme transport and metabolism
• COG ID: [COG0259] Pyridoxamine-phosphate oxidase
• TIGRFAM ID: [TIGR00558] pyridoxamine-phosphate oxidase

Plasmid Coverage information

• Num covering plasmid clones: 7
• Plasmid unclonability p-value: 0.392091
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCGCAAA ATGAGTTAAC AACCGGTGAC TTTACCGATG AACATGAACC TTTTGGCTTG 
TTCGAAACGT GGCTCACGGA GGCAAAGGCC TCGGAGATCA ACGATCCCAA CGCTGTCGCA 
TTGGCGACAG TCGATGAAAG CGGCCTGCCA AATGTGCGCA TGGTGCTGCT GAAAGATTTC 
GATCAAAACG GATTCGTCTT CTATACCAAC TTCGAGAGCC AGAAGGGTAC GGAGATTCTT 
TCCCAAAAGA AAGCCGCGAT GTGCTTTCAC TGGAAATCCC TGCGACGCCA GGTGCGGTTG 
CGCGGCGAAG TGGAGGTCGT GTCCGACGCC GAGGCCGATG CCTATTACCA GACAAGACCG 
ATCGGCAGCC GGATCGGCGC CTGGGCCTCG AAACAGTCGC GGCCGCTGGA GAGCCGGTTT 
GCGTTGGAAA AAGCGGTTGC CGAATATACG GCGCGTTACG CCCTGGGGTC TATTCCCCGT 
CCAGCCCATT GGTCGGGTTT CCGGATCAAG CCATTGACCA TCGAATTCTG GCGTGACGGT 
AAATTCCGCC TGCATGACCG GATCGAGTTT CGCCGCGAGG CGCTGGGGCA GCCCTGGAAC 
AAGGTGCGTA TGTATCCTTG A 

 

Protein sequence

MSQNELTTGD FTDEHEPFGL FETWLTEAKA SEINDPNAVA LATVDESGLP NVRMVLLKDF 
DQNGFVFYTN FESQKGTEIL SQKKAAMCFH WKSLRRQVRL RGEVEVVSDA EADAYYQTRP 
IGSRIGAWAS KQSRPLESRF ALEKAVAEYT ARYALGSIPR PAHWSGFRIK PLTIEFWRDG 
KFRLHDRIEF RREALGQPWN KVRMYP