| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_0773 |
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| Symbol | fliR |
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| ID | 7386273 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 660951 |
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| End bp | 661703 |
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| Gene Length | 753 bp |
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| Protein Length | 250 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 643650344 |
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| Product | flagellar biosynthesis protein FliR |
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| Protein accession | YP_002548554 |
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| Protein GI | 222147597 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1684] Flagellar biosynthesis pathway, component FliR |
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| TIGRFAM ID | [TIGR01400] flagellar biosynthetic protein FliR |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATCACTG ATCCGCAAGG ATCGGTACTG GCGCTGTTTC TGGTGTTTTG CCGTATCGGT
TCCTGTTTCA TGACCATGCC GGGTTTTGCG TCCTCGCGCA TTCCCACCCA GATCCGCCTG
TTGCTCGCTG TCGCGGTCTC CATGGCCTGC ACGCCGCTTG TCTGGGACAC CGTGTATCCC
AAGGTGAGCA GCGGCGGTTC GATTTTTGTC GCGTTGATCT TTACGGAAAC GCTGATCGGC
GCCGTCTTTG GGCTGATTAC CCGATTTTTC ACGCTTGGCC TGCAATTTGC CGGTGCTATC
TTGACGATGA TGATCGGTTT CAACAGCACG GCCACGGCGG ATGTTCTGGA AGACGGTGCC
GAAAACCAGA TGACCAACAT GATCAGCTTT TGCGGGCTGA TGATGCTGTT CATGATGGAT
TTTCACCATG TCGTCTTCCG GGCGCTGATA GACAGCTATA CCGTCATGCC GATGGGCGGC
GTGCCCGATA CCCAGAAGAT GCTGATAACG CTGACGGATA CCGCCTCGCG GACCTATATG
CTGATGCTGC GGCTTTCCAG CCCCTTCATC ATCTATGGCC TGATGTTCAA TCTCGGCGTC
GGCCTGGTCA ACAAGCTGGC ACCGCAGATC CCGGTCTACT ACATCTCCAC CCCCTATCTT
ATCACCGGGG GAATGCTGCT GGTTTATTGG TCGATCGGGG TGATGATGCG CCAGTTCGCC
GATGCTTTCA TACCGATCTT CCTGGGGCAT TGA
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| Protein sequence | MITDPQGSVL ALFLVFCRIG SCFMTMPGFA SSRIPTQIRL LLAVAVSMAC TPLVWDTVYP
KVSSGGSIFV ALIFTETLIG AVFGLITRFF TLGLQFAGAI LTMMIGFNST ATADVLEDGA
ENQMTNMISF CGLMMLFMMD FHHVVFRALI DSYTVMPMGG VPDTQKMLIT LTDTASRTYM
LMLRLSSPFI IYGLMFNLGV GLVNKLAPQI PVYYISTPYL ITGGMLLVYW SIGVMMRQFA
DAFIPIFLGH
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