| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_0713 |
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| Symbol | |
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| ID | 7388738 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 614054 |
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| End bp | 615301 |
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| Gene Length | 1248 bp |
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| Protein Length | 415 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 643650301 |
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| Product | capsule polysaccharide export inner-membrane protein |
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| Protein accession | YP_002548511 |
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| Protein GI | 222147554 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3524] Capsule polysaccharide export protein |
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| TIGRFAM ID | [TIGR01010] polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0967501 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTTCCGC ATCGCTTGCG CCAACAGGAA CGCAATATGA GCCTTGAAGT CGGTTTTCCC
GTTCATGATG CCCAAAAGAC CAATCGAGGA CAAACTGGCA CCCCCAGCCT GTCTAAAAAA
GGTATTGTCG GGACGCTGCT TGGCCTGTTT TTTACCAAGA AAAATTCTCT TATTGCTTTC
GTGCTGGTGC CGAGTGTCTT TGCTGCGATC TATTATTCCC TGATTGCCAG CGGCCAGTAT
ATTTCCGAGA CCCGTATGGT TGTTCGCACC ATCGGCGTCA GCGAACGTTT CGACACGTCT
GAGCAACGAG AAGGCCGCTC AATCATCGGC GGCGATTCGT TGACGCAGGA TTCCTATATC
GTCGCCAATT ATCTGAAATC GCCTCAAATC GTCAGGAAGC TGGACACCGA AATCGGGCTA
CGCAATTTTT TCTTGAAAGA CGGTATCGAC CCGCTATCAC GCCTGTCCAG CGACCCCACA
TCCGAGGACC TTCATAAATA TTGGATGCAG CATGTCGATA CTTATGTCGA CGGCCCGTCC
GGCATTATCA TTTTTACCGT TCGAGCCTTC TCGCCAGAGG ATTCGGTCAG CATATCCAAG
GCGGCCCTCG CTGCTGCCGA TGAAATGATC AGCAAGATTT CCGACAAGGC CAAGAGCGAC
CTGGTTGACC GGGTCGAACA CGACTTGATC GGCAGCCTTG AAGACTATCG CAAGGCGCTG
GACGATCTGC GGGAATATCA GAACAAGACA GGTATTCTCG ATCCGGTTTC GTCCGCAAAA
ATGGTCAGCA CGATCATTTC GAAGCTGACT GAGCAGAAAT TGAACCTGAC AGTCGATCTG
AAATCCCTCG AAGCCGCCAA AGCGGACAAT ACGGCGCGTG GAAGAGAGCT TCGCCGGTCG
ATCCAAGCGA TCGACGATCA GATACAATTG CGCCAGAACA GCCTGGCGGG CAAGGATACC
AACGATCCAA CTCAGCTTTC GACCAGCATG ATCGAGTTTT CCAGGCTGGA GACACGGCGG
ATCGTGACCC AGGCGCTTTA CGAAGCGACA GTCAAAAATC TCGACACGGC AAAATCCACA
GCACTGAAAC GAACCACATT CGTTTCTATT TTCTCGGATT CGCACGCGCC GGAAAAGTCA
AAATACCCTG AACGTTTTTC CGCATGGCTC ATTCTCTCTG CTGGCCTCTT CACGCTTTGG
ATGACAGCAA CCCTGGTCTG GATGTCGATC GAGGATCATA AGGCCTGA
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| Protein sequence | MFPHRLRQQE RNMSLEVGFP VHDAQKTNRG QTGTPSLSKK GIVGTLLGLF FTKKNSLIAF
VLVPSVFAAI YYSLIASGQY ISETRMVVRT IGVSERFDTS EQREGRSIIG GDSLTQDSYI
VANYLKSPQI VRKLDTEIGL RNFFLKDGID PLSRLSSDPT SEDLHKYWMQ HVDTYVDGPS
GIIIFTVRAF SPEDSVSISK AALAAADEMI SKISDKAKSD LVDRVEHDLI GSLEDYRKAL
DDLREYQNKT GILDPVSSAK MVSTIISKLT EQKLNLTVDL KSLEAAKADN TARGRELRRS
IQAIDDQIQL RQNSLAGKDT NDPTQLSTSM IEFSRLETRR IVTQALYEAT VKNLDTAKST
ALKRTTFVSI FSDSHAPEKS KYPERFSAWL ILSAGLFTLW MTATLVWMSI EDHKA
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