Gene Avi_0710 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_0710 
Symbol 
ID7388735 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011989 
Strand
Start bp610760 
End bp611791 
Gene Length1032 bp 
Protein Length343 aa 
Translation table11 
GC content54% 
IMG OID643650298 
ProductIntegrase protein 
Protein accessionYP_002548508 
Protein GI222147551 
COG category[L] Replication, recombination and repair 
COG ID[COG4973] Site-specific recombinase XerC 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCCCTCA AACTCATTAA GCGACACGGC GGTAAAAATT GGTATATCCG CGGTACCATC 
CGAGGCGTCT CAGTGGACGA AACTACAGGA ACTGACGACA AGAAAAGGGC GGAAGAAATC
CGTATCCGAC GCGAAACGGA AATCCTCGAC CGTCGTATCC ATGGAATCAG AAAAACAGCG
ACGTTCCTTG AAGCCAGTGT GATGTATCTA GAAGAGGGCG GCGCAAGCCG GTTTGTGGAT
GTTGTTGCCC GTTACTTTGG CACCACGCCA CTCTCCGAGA TCGACCAACC GGCAATAGAT
CGGGCGGCAC GGGTTCTCTA TCCTGATGCC AAAGCATCCA CCAGAAACCG GCAGGTCTTC
ACGCCGGTTT CTGCCGTCCT CAACTTTGCC GCAAAAAAGA AGATGTGTGA CAAGCCTATC
ATTGAACGGC CTGCCCAACC CAAAGGGCGA ATTCGATGGA TTACCATCGA AGAAGCGCAG
TCGTTGATTG ACGCCTGTGC ACCGCACCTC AAGCCTCTTG TGACGTTTCT GTTTTATACG
GGCGCGCGGC TATCCGAGGC GCTTTATCTC GACTGGCGAG ACGTGGACCT TTCACGGTCG
CACGTTGCCT TCTTGGATAC CAAGACGGGC GACGATAGAG GTGTTCCGCT CCACTCTGGC
GTGGTCGCAA TGCTGGCGAA CTTGCCGCAC CGTGAAGGTG CGGTTTTTCG TCGGCATGAT
GGCAAGCCTT ACGAAGTGAA GGAAGACGGC GGCGGGCAGA TCAAGACCGG GTTCAAGGGC
GCTTGCCGTA GAGCCGGGAT TTCCGACTTC CACCCCCACG ATTGCCGCCA CACATGGGCG
ACCTGGCACT ATGCCGCAAA CCGCGACCTT ATCACCTTGA TGAGACTCGG CGGCTGGAAA
TCTGAGCGCA TGGTTTTGAG GTATGCGCAC ATCAACGTCG ATGATCTTGC AAGCTCGATA
GAATCCATTC CTTGGGGAAA ATCCGGGGAT GTGAACAGCG GTCAAAAGAA AAACGTAAGG
AAAACAAAGT GA
 
Protein sequence
MSLKLIKRHG GKNWYIRGTI RGVSVDETTG TDDKKRAEEI RIRRETEILD RRIHGIRKTA 
TFLEASVMYL EEGGASRFVD VVARYFGTTP LSEIDQPAID RAARVLYPDA KASTRNRQVF
TPVSAVLNFA AKKKMCDKPI IERPAQPKGR IRWITIEEAQ SLIDACAPHL KPLVTFLFYT
GARLSEALYL DWRDVDLSRS HVAFLDTKTG DDRGVPLHSG VVAMLANLPH REGAVFRRHD
GKPYEVKEDG GGQIKTGFKG ACRRAGISDF HPHDCRHTWA TWHYAANRDL ITLMRLGGWK
SERMVLRYAH INVDDLASSI ESIPWGKSGD VNSGQKKNVR KTK