Gene Avi_0622 details

Gene Information

• Locus tag: Avi_0622
• Symbol: mscL
• ID: 7388674
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: +
• Start bp: 541815
• End bp: 542249
• Gene Length: 435 bp
• Protein Length: 144 aa
• Translation table: 11
• GC content: 55%
• IMG OID: 643650236
• Product: large conductance mechanosensitive channel protein
• Protein accession: YP_002548448
• Protein GI: 222147491
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG1970] Large-conductance mechanosensitive channel
• TIGRFAM ID: [TIGR00220] large conductance mechanosensitive channel protein

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGATCTGG CCGTCGGTGT CATCATTGGT GGCGCCTTCG GTTTGATCGT TACCTCGTTG 
GTCAATGATA TCGTCATGCC GGTGGTTGGC GTGGTGTTCG GCGGGTTCGA TTTTTCCAAT 
TATTTCCTGC CGCTCAGCGA CAAGGTCACG GCCCAGACCC TGGCCGAAGC GCGCAAACAG 
GGCGCAGTAT TCGCCTATGG CAACTTCCTG ACCGTCGCCA TCAATTTCGT CATTCTGGCC 
TGGATCATTT TCCTGATGGT CAAGGGAGTC AACGTCCTGC GCAAACAGCT GGAACATGAT 
GAAAAACAGG GCAAACCCAC ACCGCCACCA CCGGCAGACG TCGTGCTGCT GACAGAGATC 
CGCGATTTGC TGAAGGCACA GCAGAGCAAC GAACCCGAAG CGTCTTCAGG ACATATTGAG 
CCAGGCAAGC CTTGA 

 

Protein sequence

MDLAVGVIIG GAFGLIVTSL VNDIVMPVVG VVFGGFDFSN YFLPLSDKVT AQTLAEARKQ 
GAVFAYGNFL TVAINFVILA WIIFLMVKGV NVLRKQLEHD EKQGKPTPPP PADVVLLTEI 
RDLLKAQQSN EPEASSGHIE PGKP