| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_0599 |
|---|
| Symbol | acd |
|---|
| ID | 7388990 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | - |
|---|
| Start bp | 513407 |
|---|
| End bp | 515200 |
|---|
| Gene Length | 1794 bp |
|---|
| Protein Length | 597 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 643650218 |
|---|
| Product | acyl-CoA dehydrogenase |
|---|
| Protein accession | YP_002548430 |
|---|
| Protein GI | 222147473 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1960] Acyl-CoA dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCCGTCT ATAAGGCACC TGTCGCGGAC ACGCTTTTCA TTCTGAACAC AGTGCTGGGC
CTGGAGCGCT ACAACAACCT GCCCGGTTTT GAAGACGCGA CGCCCGACAT GATCGAGGCG
ATTGTCGGCG AAGCTGCCAA GCTTGCCGAA GAGCAACTGT TTCCGCTCAA TCTTTCCGGC
GACCAGGAAG GCTGTACCCG CAATGCGGAT GGCTCCGTGG CCGTGCCGAA GGGTTTCAAG
GAAGCCTATG ACGCCTATTG CGCCGGTGGC TGGAGCGGCC TTGCCGTCCC ACCGGAATAT
GGCGGCCAGG GCCTGCCTTA CGTGCTGCAT GCCGCCGTTG GGGAATATAT GTCGTCGGCC
AACATGGCCT TGATGATGTA TCCGGGCCTG ACACAAGGGG CGATTGCCGC CATTTTGGCG
CATGGCACCG ACCAACAAAA GCAGACCTAT CTGCCGAAAA TGGTCGAGGG CACATGGTCC
GGCACCATGA ACCTGACTGA GCCCCATTGC GGCACGGACC TTGGCCTGCT GCGCACCAAG
GCCGTTCCCA ATGGTGACGG CACCTATAAA ATCTCCGGCC AGAAAATCTT CATCTCGGCT
GGTGAACACG GGATGAGCGA GAATATCATC CATCTGGTTC TCGCCCGTAT CGAAGGCGCG
CCTGAGGGTA CCAAGGGCAT TTCGCTGTTC ATCGTCCCCA AAGTCATCGT CGGTGAAGAC
GGGGCGCTGG GTGCCAAAAA TGGTGTGTCC TGCGGTGCCA TCGAACACAA AATGGGCATT
CACGGCAATG CCACGTGCGT GATGAACTAT GACGAGGCCA CCGGCTATCT GATCGGCGCG
GAGAACAAGG GCCTGTCGGC GATGTTCGTG ATGATGAACG AGGCCCGTCT GGGCGTCGGC
CTGCAAGGCC TGTCGATTGC CGAAATCGCC TATCAGAACG CCGTGACCTA TGCGCGGGAG
CGTATTCAGG GCCGCTCGCT GTCTGGCGCA AAGGCGCCGG ATAAAACGGC CGACCCGATC
ATCGTTCACC CCGATATTCG CCGCGCCCTG ATGACCATCA AGGCCTTCAA CGAAGCAGGC
CGCGCCTTCA CGCTCTGGAC CGCGCTGAAA TCCGACATTG CCCACCGCGC CGGTGATGCG
GCTGAAAAGC AGACCGCCGA TGACATTCTC GGCCTGATGA CGCCGATCCT CAAGGGTGTG
TTGACCGACA AGGGCTTTGA CCATGCGGTC ATGGCCCAGC AGGTCTATGG CGGCCATGGC
TATATCGAAG AATGGGGCAT GAGCCAGTAT GTACGCGATG CCCGCATCGC GATGATTTAT
GAAGGGGCGA ACGGCATTCA GGCGCTGGAT CTGGTCGGCC GCAAGCTGGG CTTGAACGGT
GGCCGCGCCG TGATGGCGCT GTTCAACGAA ATCGGTGCCT TCTGCGAGGA AAACCGCGAG
AATGAAAAGC TGTCCTTCTT CACCAAGCAG CTGAAGAAGG GGCTGAACGA TGCTCAGGCA
TCCACCATGT GGTTCATGCA AAACGCCATG GCCAAGCCCG ACAATGCCGG TGCTGGCTCG
ACCGATTACA TGCATCTCTT CGGTCTGGTT GTGCTGGGCT ATATGTGGGC CAAAATGGCC
AAGGCCGCCC ATGAGGCACT TGAAAGTGGC CCTAGTGATG CTGATTACTA CAACAACAAG
CTGTTGACCG GTCGCTTCTT CATGGAAAAG ATCATGCCGG AAACCGCCTT GCGCAAGTCG
CGCATCGAAG CGGGTGCTGA CAGCGTGATG GCGATGGCCG CCGAAGCATT TTGA
|
|---|
| Protein sequence | MPVYKAPVAD TLFILNTVLG LERYNNLPGF EDATPDMIEA IVGEAAKLAE EQLFPLNLSG
DQEGCTRNAD GSVAVPKGFK EAYDAYCAGG WSGLAVPPEY GGQGLPYVLH AAVGEYMSSA
NMALMMYPGL TQGAIAAILA HGTDQQKQTY LPKMVEGTWS GTMNLTEPHC GTDLGLLRTK
AVPNGDGTYK ISGQKIFISA GEHGMSENII HLVLARIEGA PEGTKGISLF IVPKVIVGED
GALGAKNGVS CGAIEHKMGI HGNATCVMNY DEATGYLIGA ENKGLSAMFV MMNEARLGVG
LQGLSIAEIA YQNAVTYARE RIQGRSLSGA KAPDKTADPI IVHPDIRRAL MTIKAFNEAG
RAFTLWTALK SDIAHRAGDA AEKQTADDIL GLMTPILKGV LTDKGFDHAV MAQQVYGGHG
YIEEWGMSQY VRDARIAMIY EGANGIQALD LVGRKLGLNG GRAVMALFNE IGAFCEENRE
NEKLSFFTKQ LKKGLNDAQA STMWFMQNAM AKPDNAGAGS TDYMHLFGLV VLGYMWAKMA
KAAHEALESG PSDADYYNNK LLTGRFFMEK IMPETALRKS RIEAGADSVM AMAAEAF
|
|---|
| |