| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_0587 |
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| Symbol | dinF |
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| ID | 7388981 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 503591 |
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| End bp | 504934 |
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| Gene Length | 1344 bp |
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| Protein Length | 447 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 643650209 |
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| Product | DNA-damage-inducible protein F |
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| Protein accession | YP_002548421 |
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| Protein GI | 222147464 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0534] Na+-driven multidrug efflux pump |
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| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCATCG CCAATCCCCC CGACCGCGCT TTTCGTGTGA CCCATCGCGG CGTGCTGGCC
ATCGCCATTC CGATGACCAT TGGCTATATC ACCACACCGC TTCTGGGCAT TACCGATACC
GCCGTCATTG GTCGAACCGG CGAAGCCGCA GCGCTTGCGG GCCTGGCAAT TGGTGCCGTG
CTGTTCGATC TGGTGTTTGC CAGCCTCAAT TTCCTGCGCG CCTCTACCAC GGCGCTGGTG
GCGCAAGCGC ATGGCCGTCA GGATGCACGC GATCAGGTGG CGGTGTTCTG TCGCTCCATG
ATATTGTCGG TGGGCATTGG GCTGCTGTTG CTGCTGCTGT CTCCCCTGCT GCTGAAGGCC
GGGCTGGCGC TGATGGGGCC ACAGGGACGG GTGGCGGAGG TGACGTCGAT CTATTTTTCC
ACCCGCATCC TGGCCGGGCC GTTGACGCTC GCCAACTTCA CCATCATGGG CTTCATCCTG
GGGCGCGGCA AAGGCGCGCT GGCGCTTGGC CTGCAAATTG CGCTGAACGG CGTCAATATT
CTGCTTTCAA TCTACCTTGG TCTTCATCTT GGCTGGGGCG TATCCGGCGT CGCCTGGGGG
GCCGTGGCCG GGGAAGCCAC CGCCACGCTT GCGGGGTTGG CGATCATTCT GGCCCGCACC
GACAAGGCAC TGTTTCCGTC CCTGGCCGAA TTGCTGGATC GCAACAAGCT CGCCCAATTG
TTTGCCCTCA ACCGCGATAT CCTGATCCGT AGCTTCGTGC TGCTGGCGGC CTTCACGGTA
TTGACCCGGA TCGGCACCGG CTTTGGGGCC GTGACCCTTG CCGCCAATGC GCTGCTGATG
AATTTCTTCA TGATTGCCTC CTTCTATCTG GATGGCATTG CCAATGCTGC CGAACAGATC
GTTGGCCGGG CTGTCGGTGC CCGCTACCGC CCCGCTTTCG ACCAGGCCGT CAGGCTCACC
AGCCTCTGGT CCTTCGGACT GGCGCTCACC AGCCTGCTGT TTTTCCTGGG CGCAGGTGGA
GCGATCATCG ACATGATGAC GACGGCTGAA GAGGTTCGCC GCGTGGCACG CGAGTTTCTG
CCCTGGGCCG CCATGACCGC GATGACCGGG GCGCTGGCCT TCCAGATGGA CGGGGTCTTC
ATCGGGGCCG CCTGGTCTAG CGATATGCGC AATATGATGC TGGCGGCCTT TGCCGGTTAT
CTTATTGCGC TGGCGCTGTT CGTGCCGCTG CTAGGCAATC ACGGCCTATG GCTGGCGCTC
AACCTGTTTC TGGCGTTTCG CGGCCTTTTC CTGGCGCTGC GGCTCAAAAG CCGCCGCGAT
CAGACCTTCA GCGCCCGCCA GTAA
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| Protein sequence | MTIANPPDRA FRVTHRGVLA IAIPMTIGYI TTPLLGITDT AVIGRTGEAA ALAGLAIGAV
LFDLVFASLN FLRASTTALV AQAHGRQDAR DQVAVFCRSM ILSVGIGLLL LLLSPLLLKA
GLALMGPQGR VAEVTSIYFS TRILAGPLTL ANFTIMGFIL GRGKGALALG LQIALNGVNI
LLSIYLGLHL GWGVSGVAWG AVAGEATATL AGLAIILART DKALFPSLAE LLDRNKLAQL
FALNRDILIR SFVLLAAFTV LTRIGTGFGA VTLAANALLM NFFMIASFYL DGIANAAEQI
VGRAVGARYR PAFDQAVRLT SLWSFGLALT SLLFFLGAGG AIIDMMTTAE EVRRVAREFL
PWAAMTAMTG ALAFQMDGVF IGAAWSSDMR NMMLAAFAGY LIALALFVPL LGNHGLWLAL
NLFLAFRGLF LALRLKSRRD QTFSARQ
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