| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_0570 |
|---|
| Symbol | |
|---|
| ID | 7388968 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | - |
|---|
| Start bp | 480970 |
|---|
| End bp | 483123 |
|---|
| Gene Length | 2154 bp |
|---|
| Protein Length | 717 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 643650196 |
|---|
| Product | ABC transporter nucleotide binding/ATPase protein |
|---|
| Protein accession | YP_002548408 |
|---|
| Protein GI | 222147451 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG2274] ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain |
|---|
| TIGRFAM ID | [TIGR01846] type I secretion system ABC transporter, HlyB family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGAACGTTG ATGTTTTTCC GGAAGCCGTG GATTCCGGTC TGTCTGCTCT TTGCGGAATA
GCCGCCTTCT TCAGGATCGC GGCGGACCCC AGGCATTTAC AAAAAGAACT AGCTCTGACA
GGGCGGGCTG CCGATGAAGA CGATCTGGTA CGCGCAGCTG CCATGATTGG TCTTAAAGCT
CGCACCGTTA CTGGGTTGAC CGAAAAGCGC CTGAACACCG TCCCTGTTCC AACCATCGCC
TGCATGAGCG ATGGTGGCTT CCAGGTCTAC GCGGGCAAGA CGACGAGTGG TGGCTATCGT
GTAGTTGACC CAATAACCAA AATCGCCCGC GAATTGACAA TCGATGCCCT GATGGCCGAA
CTCGGACGGA AACTCGTCCT GGTCGGCCTG CGCGTCGGAG GACAAGGTAC CGACCCCAGA
AAGTTCGGCT TGAGTTGGTT TTTGCCGTCT ATCTGGCGCT ATCGCAAGCC GATCATCCAC
GTCCTGCTCG CCTCTTTTTT CGTTCAGATC TTCGCTCTCG TCTCGCCGCT CTTTTTCCAA
GTCGTGGTTG ACAAAGTTCT AACGCACAAG GGCTATTCGA CACTCATTGT TCTGGTCGTT
GGCCTGGTCA TTGTGGGCTT ATTCGATGTC GTGCTGAAGT ACCTGCGCAG CTATGCCCTG
TCGCACACCA CCAATCGTAT CGACATCGAA CTCGGTCAGC GTCTCTTCCG CCATCTGTTA
CATCTGCCGC TCGGCTATTT CGAAACGCGG CCGGCCGGAC ATACCGTCGC AAGAGTGCGT
GAGCTTGAAA CCATCCGCAA TTTCTTGACC GGGCAGGCTT TGTTCTCAGT CATCGACCTG
TTCTTTACCA TTGTCGCGAT TGGCGTTCTG TCGGTTTACT CCGTGTGGCT GACGTTGATC
GTCGTCGCTT CAATCCCCCT TTACGTGTTG ATCGCACTTC TCGTGCGTCC GGCGTTACGC
AGCAAGATCA ACGAAAAATT CAATCGCGGC GCCATAAGCC AACAATTCTT AGTTGAGGCT
GTCGTCGGCA TCCACACAGT CAAGGCCGGT GCGGTGGAGC CTGTCATGCA GGCGCAATGG
GCCGAACGAT TGGCGGCCTA TGTTCGAACC AGCTTCGATG TGACGATGCT AAGTGCAGGC
GGACAGAACG CAATTCAATA TGTCAGTAAA ATCTCTACCG CTCTTATCCT TCTGTTCGGC
GCCAAGGCGG TTATTGATAA TGATCTGACC GTCGGTGGCC TGATCGCCTT CAATATGATT
GCTGGACAGG TCGCGCAGCC GATTCTGCGG CTGTCGCAAG TCTGGCAGGA CTTCCAGCAG
GTGCAGATCT CCATGGACAG ACTGGGCGAT ATCCTGAATT TTCCCACGGA ATATGCGCCG
AAAACAGCAC TAACGCTTGC CAGGCCCCGA GGTGGCATCG ACATCCATGA CGTGACCTTC
CGTTATCGTC CAGGTGGGCC AGAAATCCTA AAATCCGTCA GTCTCAGTGT CCGTCCAGGA
GAAATCATAG GTATCGTCGG CTCGTCTGGC TCCGGAAAGT CCACACTGAC AAAACTGGTT
CAACGTCTTT ATAGCCCTGA GCAGGGCCAA CTTCTTCTGG ATGGCACTGA TATTTCTCAG
CTCGATCCAG CATGGCTGAG GGGACAAATT GGCGTCGTCC TACAAGAAAA CCTGCTGTTC
AACAGAACGA TCCACGAAAA TATCGCTTTC GCAAACCCGG CCCTGCCGCG CGCAACAGTG
ATCGCAATTG CCACGTTGGC CGGCGCTGAC GAGTTCATAT CGAAGCTGCC ACAGGGCTAT
GACACACAGA TTGAGGAACG GGGAGCCAAT CTATCTGGTG GGCAACGGCA GCGAATTGCA
ATTGCAAGAG CGCTCGCCAC GAACCCACCG ATCCTTATTT TCGATGAAGC CACCTCTGCG
TTGGACTACG AAAGTGAGCG GGTGATTCAA AACAATATGA GCAAAATATC GCAAGGCAGA
ACAGTGCTGA TCATCGCCCA CCGGCTGGCG GCGGTGCGGC CATGCAACCG TATAGTTGGG
ATGAGGGACG GCAAGATTGC CGAAGTAGGC AGTCATTCTG AGCTGCTCGC AAAACCTGAA
GGCATCTATG CCAGGCTTTG GGCACTGCAA AACGATCCAG CAGGTGTGTC ATGA
|
|---|
| Protein sequence | MNVDVFPEAV DSGLSALCGI AAFFRIAADP RHLQKELALT GRAADEDDLV RAAAMIGLKA
RTVTGLTEKR LNTVPVPTIA CMSDGGFQVY AGKTTSGGYR VVDPITKIAR ELTIDALMAE
LGRKLVLVGL RVGGQGTDPR KFGLSWFLPS IWRYRKPIIH VLLASFFVQI FALVSPLFFQ
VVVDKVLTHK GYSTLIVLVV GLVIVGLFDV VLKYLRSYAL SHTTNRIDIE LGQRLFRHLL
HLPLGYFETR PAGHTVARVR ELETIRNFLT GQALFSVIDL FFTIVAIGVL SVYSVWLTLI
VVASIPLYVL IALLVRPALR SKINEKFNRG AISQQFLVEA VVGIHTVKAG AVEPVMQAQW
AERLAAYVRT SFDVTMLSAG GQNAIQYVSK ISTALILLFG AKAVIDNDLT VGGLIAFNMI
AGQVAQPILR LSQVWQDFQQ VQISMDRLGD ILNFPTEYAP KTALTLARPR GGIDIHDVTF
RYRPGGPEIL KSVSLSVRPG EIIGIVGSSG SGKSTLTKLV QRLYSPEQGQ LLLDGTDISQ
LDPAWLRGQI GVVLQENLLF NRTIHENIAF ANPALPRATV IAIATLAGAD EFISKLPQGY
DTQIEERGAN LSGGQRQRIA IARALATNPP ILIFDEATSA LDYESERVIQ NNMSKISQGR
TVLIIAHRLA AVRPCNRIVG MRDGKIAEVG SHSELLAKPE GIYARLWALQ NDPAGVS
|
|---|
| |