Gene Avi_0561 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_0561 
Symbol 
ID7388964 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011989 
Strand+ 
Start bp476132 
End bp476833 
Gene Length702 bp 
Protein Length233 aa 
Translation table11 
GC content56% 
IMG OID643650192 
Producttransposase protein 
Protein accessionYP_002548404 
Protein GI222147447 
COG category[L] Replication, recombination and repair 
COG ID[COG3316] Transposase and inactivated derivatives 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCAGACAC CCGATATCAG TTTCAAGCGT CACCGTTTTG CGCCGCAGAT CGTTTCTCAA 
GCGGTTTGGC TTTACATGCG GTTCAACCTG AGCCTTCGTG AAGTTGAGGA AATGCTACTC 
GAGCGTGGGA TAGATCTTTC ATATGAGTCG ATCCGCCGTT GGATCGCCAA GTTCGGACCC 
CATATCGCCC GCAACTTGCT CAGACGGCAG GCCCGCCCCG GCGATGTTTG GCATCTGGAC 
GAGGTTGTTG TGAAGTGCGC TGGAGAGAAG TTCTGGCTCT GGCGCGCAGT CGATCAGCAT 
GGCACCGTTC TCGAAGAAAT AGTACAGAAG CGGCGTGACA AAAGGGCAGC CAAGCGCCTG 
CTCGTGGCGT CGATGAAGCG CTATGGCTTT GTTCCCAAGC GGATCATCAC TGATAAGCTG 
TGCTCCTACG GTGCGGCAAA GGCGGATGTG GCTCCCGGCC TTAACCGTTG GTCGCACAAG 
GGGCTCAACA ATCGGGCCGA GAACAGCCAT CTGCCGTTTC GAAAACGAGA ACGAACCATG 
CAGGGCCACC GATCGCCAGG AGCGTTGCAA CGGTTCGTTG CCATGCACTC AGCCACCCGC 
AATTGCTTTT TTGTTCCCTC CCGCCGCCGC GCCGCACAAA CAATTCGCTA CCATCGCCTC 
GAAGCGTTTG ATGCATGGAA AATTGCTGCC TGCATCGCTT AA
 
Protein sequence
MQTPDISFKR HRFAPQIVSQ AVWLYMRFNL SLREVEEMLL ERGIDLSYES IRRWIAKFGP 
HIARNLLRRQ ARPGDVWHLD EVVVKCAGEK FWLWRAVDQH GTVLEEIVQK RRDKRAAKRL 
LVASMKRYGF VPKRIITDKL CSYGAAKADV APGLNRWSHK GLNNRAENSH LPFRKRERTM 
QGHRSPGALQ RFVAMHSATR NCFFVPSRRR AAQTIRYHRL EAFDAWKIAA CIA