| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_0542 |
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| Symbol | def |
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| ID | 7388948 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 461335 |
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| End bp | 461865 |
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| Gene Length | 531 bp |
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| Protein Length | 176 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 643650176 |
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| Product | peptide deformylase |
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| Protein accession | YP_002548389 |
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| Protein GI | 222147432 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0242] N-formylmethionyl-tRNA deformylase |
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| TIGRFAM ID | [TIGR00079] peptide deformylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGGGAGAT TCATGACGAC AAAGCCGATT ATCATTTTGC CTGACCCGCT GCTGCGCGAG
GTCTCCCAAC CCATTGAGCG GATCGATGCC GACCTTGAGC GGCTGATCGA TGACATGCTC
GAGACCATGT ATGATGCGCC CGGTATCGGC CTCGCTGCCG TTCAGATTGC CGTGCCTCGT
CGCCTTCTGG TCATCGATGT CTCGAAGGAA GGTGAAGACA AGCAACCGCT GGTCTTTATC
AACCCGGAAA TCATTGGCAG TTCGCAGGCC CGCTCCACCT ATGAGGAAGG CTGCCTTTCC
ATTCCCGATT ACTATGCGGA GGTGGAGCGC CCGGCCGCCG TCACGGTAAA ATCACTGGAT
CGCCACGGCA AGGAACAGGT GATCGAGGCC GATGGCCTGC TTGCCACCTG TCTGCAACAT
GAAATCGACC ATCTAAACGG CACGCTGTTC ATCGACCATA TTTCGCGGCT GAAACGTGAA
ATGGTGATCA AGAAATTCTC CAAGGCGGCG AAGTCAAAGG TGACGGTCTA G
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| Protein sequence | MGRFMTTKPI IILPDPLLRE VSQPIERIDA DLERLIDDML ETMYDAPGIG LAAVQIAVPR
RLLVIDVSKE GEDKQPLVFI NPEIIGSSQA RSTYEEGCLS IPDYYAEVER PAAVTVKSLD
RHGKEQVIEA DGLLATCLQH EIDHLNGTLF IDHISRLKRE MVIKKFSKAA KSKVTV
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