| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_0474 |
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| Symbol | dapE |
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| ID | 7388476 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 402014 |
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| End bp | 403228 |
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| Gene Length | 1215 bp |
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| Protein Length | 404 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 643650121 |
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| Product | succinyl-diaminopimelate desuccinylase |
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| Protein accession | YP_002548335 |
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| Protein GI | 222147378 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
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| TIGRFAM ID | [TIGR01246] succinyl-diaminopimelate desuccinylase, proteobacterial clade |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.987794 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCAAAGC ATCCAGCCAA TTCATCTGCC ACCGATCCCG TCGACAATCT TCAGACCCTG
ATCCGCTGCC CCTCCGTGAC GCCTGCCGAG GGCGGGGCGC TGTCGGCGCT GGCCGCCATG
CTGGAACCGT TGGGCTTTAC CGTGGAACGG ATGGTGGCGC GCGAAGAGGG CACGCCGGAT
GTCGAGAACC TCTATGCCCG GCTGGGCACG GAGGGGCCGC ATCTGATGTT TGCCGGGCAT
ACAGATGTGG TGCCTGTAGG CAATGAGGCG GACTGGACCT ATCCGCCGTT TTCCGCCGAG
ATCGCTGGAG GCGAACTTTA CGGACGTGGC GCGGTCGATA TGAAGGGCGG CATCGCCTGC
TTTGTCGCCG CCATTGCCCG CCATATCGAA AGCCAAGGCG CGCCGAAGGG GTCTATTTCC
TTCCTGATAA CCGGTGATGA GGAAGGCCCC TCGATCAACG GCACCACCAA ACTGCTAGAA
TGGGCCGCCG CCAAAGGCGA GCGCTGGGAT GCCTGCCTGG TGGGCGAACC GACCAATCCC
GACCAGCTTG GCGACATGAT CAAGATCGGG CGGCGCGGCT CGCTGTCAGG CGAGATCATC
GTAAAGGGCG TCCAGGGCCA TGCCGCCTAT CCGCATCTGG CCGACAATCC GGTGCGGGGC
ATGATCAAGC TTGCGGAAGC GCTGATGCAT CCGGCCTTCG ATGCGGGAAC GGAAAATTTT
CAGCCTTCCA ATCTGGAAGT CACGACGATT GATGTCGGTA ACGCCGCCAC CAATGTCATT
CCGGCCCGTG CCAGCGCCAA ATTCAATATC CGCTTTAACG ATACCTGGAC CGCCGAGACG
CTGCGGACCG AAATCATTGC CCGGCTCGAT ACGGCCAGCG CCGATCCGCT GCTGCGACCA
GGCCGCCCGC CGATTGCCTA TGAGCTGGTC TGGGCCGACC GGCCAAGCCA GGTGTTCCTG
ACCCGCAACA ACGCGCTGAT CTCCTCCTTG AGTGCTGCCA TCGAAAAAAT GACCGGTAAA
ACGCCAGCCC TGTCGACAAC AGGGGGTACG TCCGACGCCC GCTTCATCAA GGATTACTGC
CCGGTGGTGG AATTCGGCCT TGTCGGCCAG ACCATGCATA TGGTCGATGA GCGGGTTGCC
GTCTCCGATC TGGAGGCGTT GACCGGCATA TATGGCGCCT TCATCAGCAG CTGGTTTACT
CATGCCGGGG CTTAA
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| Protein sequence | MSKHPANSSA TDPVDNLQTL IRCPSVTPAE GGALSALAAM LEPLGFTVER MVAREEGTPD
VENLYARLGT EGPHLMFAGH TDVVPVGNEA DWTYPPFSAE IAGGELYGRG AVDMKGGIAC
FVAAIARHIE SQGAPKGSIS FLITGDEEGP SINGTTKLLE WAAAKGERWD ACLVGEPTNP
DQLGDMIKIG RRGSLSGEII VKGVQGHAAY PHLADNPVRG MIKLAEALMH PAFDAGTENF
QPSNLEVTTI DVGNAATNVI PARASAKFNI RFNDTWTAET LRTEIIARLD TASADPLLRP
GRPPIAYELV WADRPSQVFL TRNNALISSL SAAIEKMTGK TPALSTTGGT SDARFIKDYC
PVVEFGLVGQ TMHMVDERVA VSDLEALTGI YGAFISSWFT HAGA
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