| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_0414 |
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| Symbol | trmH |
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| ID | 7388432 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 353022 |
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| End bp | 353906 |
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| Gene Length | 885 bp |
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| Protein Length | 294 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 643650076 |
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| Product | rRNA methylase |
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| Protein accession | YP_002548291 |
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| Protein GI | 222147334 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0566] rRNA methylases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTAATG GTTTCAAGGA CGGTGCCTCC AGCTTCGCCG ATAAGGGGGC AGGGGGCAAG
GTCGGGCAGG TGAAGGAAGT CACCAGCCTC GCCAACCCGA TCGTCAAGGA TATCAAGGCG
CTTTCCCAGA AAAAGACCCG TGACGAGACG CGAACGTTTC TGGCCGAAGG CCTGAAGCTG
GTGATCGATG CGGTGGAGCT CGGCTGGAGC CTGCGCTACC TGATCTATTC CAAGGCTGCC
AAGGGCAAGC CGCAGGTGGA ACGGATCGCG GCGCGCACCG TTGCCCATGG CGGCATGGTG
CTGGAGGTCA GCGAAAAGGT CATGGCGTCC ATTACCCGCA AGGATAATCC GCAAATGGTG
GCGGGTGTGT TCGATCAGCG CTGGAAGGCG CTGAAGGATG TCAGCCTGAC GGAGGGGGAA
ACCTGGGTGG CGCTCGACCG AGTGCGCGAT CCCGGCAATC TCGGCACGAT TATCCGCACT
GCCGATGCAG CGGGTGCCTC TGGTGTCATG CTGATTGGTG ACAGCACCGA TCCCTTCGCC
ATGGAGACGG TGCGTGCTAC GATGGGGTCG ATTTTCGCGC TGCCGCTGGT CAAGACCACC
GTTGCTGATT TTCTCGGCTG GAAGACCAAG GCTGGCGTCA GTGTCGTCGC CACCCATCTG
GCTGGTGCGG TGGATTACCG TACCGTGGAT TACAAGCGCC GCCCGGTCGT GGTGCTGATG
GGCAATGAGC AATCCGGCCT GCCGGAGGAA TTGGCCAGCC GGGCTGACAT GCTGGCGCGC
ATCCCTCAGG CCGGATTGGC CGATTCCCTT AATCTGGCTG TGGCAACCGG CGTCATGCTG
TTTGAAGCCC GGCGCCATCT TCTCACCCTC GACGAGGCCA AATGA
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| Protein sequence | MSNGFKDGAS SFADKGAGGK VGQVKEVTSL ANPIVKDIKA LSQKKTRDET RTFLAEGLKL
VIDAVELGWS LRYLIYSKAA KGKPQVERIA ARTVAHGGMV LEVSEKVMAS ITRKDNPQMV
AGVFDQRWKA LKDVSLTEGE TWVALDRVRD PGNLGTIIRT ADAAGASGVM LIGDSTDPFA
METVRATMGS IFALPLVKTT VADFLGWKTK AGVSVVATHL AGAVDYRTVD YKRRPVVVLM
GNEQSGLPEE LASRADMLAR IPQAGLADSL NLAVATGVML FEARRHLLTL DEAK
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