Gene Avi_0401 details

Gene Information

• Locus tag: Avi_0401
• Symbol: ptsN
• ID: 7388423
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: -
• Start bp: 344845
• End bp: 345309
• Gene Length: 465 bp
• Protein Length: 154 aa
• Translation table: 11
• GC content: 57%
• IMG OID: 643650067
• Product: PTS IIA-like nitrogen-regulatory protein PtsN
• Protein accession: YP_002548282
• Protein GI: 222147325
• COG category: [G] Carbohydrate transport and metabolism; [T] Signal transduction mechanisms
• COG ID: [COG1762] Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type)
• TIGRFAM ID: [TIGR00848] PTS system, fructose subfamily, IIA component; [TIGR01419] PTS IIA-like nitrogen-regulatory protein PtsN

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCCTTGG CAGATTTGCT ACAGCAAGAT GCGATATTGC CCGTCCTCAG GGTCAATTCC 
AAAAAACAAC TTCTCCAGGA ACTGGCTGCC AAAGCCTCAA AACTGATCGG TATTCCCGAA 
CGGGAAATCT TTGACGTTAT TTTGCAGCGG GAAAAGCTCG GTTCTACCGG TGTCGGCAAT 
GGCATTGCCA TTCCCCATGG CAAGCTGACG AGCATTTCCA CCATTCAAGG CGTCTTCGCC 
CGCCTGGAAA CGCCAATCGA TTTTGAAGCG CTGGACGAGC AGCCCGTCGA TCTGGTCTTC 
CTGCTGCTGG CACCCGAAGG GGCCGGTGCC GATCATTTGA AAGCCTTGTC GCGCATCGCC 
CGCGTGCTTC GCGATCAGGA CCTGGTTGCC AAGCTGCGCG CCAGCGACAG CGCCACCGCC 
ATCTATACCT TCCTGAACCA GGACCAGGCC TCGAACGCCG CCTGA 

 

Protein sequence

MALADLLQQD AILPVLRVNS KKQLLQELAA KASKLIGIPE REIFDVILQR EKLGSTGVGN 
GIAIPHGKLT SISTIQGVFA RLETPIDFEA LDEQPVDLVF LLLAPEGAGA DHLKALSRIA 
RVLRDQDLVA KLRASDSATA IYTFLNQDQA SNAA