Gene Avi_0397 details

Gene Information

• Locus tag: Avi_0397
• Symbol: rph
• ID: 7387838
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: -
• Start bp: 341892
• End bp: 342611
• Gene Length: 720 bp
• Protein Length: 239 aa
• Translation table: 11
• GC content: 60%
• IMG OID: 643650064
• Product: ribonuclease PH
• Protein accession: YP_002548279
• Protein GI: 222147322
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0689] RNase PH
• TIGRFAM ID: [TIGR01966] ribonuclease PH

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCGACCTT CAGGCAGAAA AACCGACCAG ATGCGCAAGA TATCGTTCGA GCGCAATTTT 
TCCAAACACG CCGAAGGCTC TTGTCTCGTC AAGTTTGGCG ATACCCATGT CCTGTGCACG 
GCAAGCCTTG AAGACCGCAC CCCGCCCTGG CTGCGCAACA CCGGCAAGGG CTGGGTGACG 
GCGGAATACG GCATGTTGCC GCGCGCCACC GGCGAGCGGA TAAAACGTGA AGCGTCCTCC 
GGCAAGCAGA GCGGCCGTAC CCAGGAAATC CAGCGGCTGA TCGGCCGTTC ACTGCGCGCC 
GTGGTCGATC TGGAAGCCCT GGGCGAACGG CAGATCTCGC TTGATTGCGA CGTGATCCAG 
GCCGATGGCG GCACCCGCAC AGCCTCGATT ACCGGCGCAT GGATTGCCTT GCACGATTGC 
CTGAAATGGA TGGAATCGCG CAATATCATC AAGGTGGACC GGGTGCTGAA GGACCATGTC 
GCGGCGATTT CCTGCGGTAT TTTCGCCGCC CAGCCAGTGA TCGACCTGGA CTATCTGGAG 
GACTCTGCCG CCGAAACCGA TGCCAATTTC GTCATGACCG GCACAGGCGG CATTGTCGAG 
ATCCAGGGCA CCGCCGAAGG CAAGCCGTTC AGCCAGGAAG AATTCCTGAC CCTTCTCGGC 
CTTGCCCAGA CAGGCATTGC CGAATTGGTG GACCTGCAAA AACAGGCGAT TGCCGGATAA 

 

Protein sequence

MRPSGRKTDQ MRKISFERNF SKHAEGSCLV KFGDTHVLCT ASLEDRTPPW LRNTGKGWVT 
AEYGMLPRAT GERIKREASS GKQSGRTQEI QRLIGRSLRA VVDLEALGER QISLDCDVIQ 
ADGGTRTASI TGAWIALHDC LKWMESRNII KVDRVLKDHV AAISCGIFAA QPVIDLDYLE 
DSAAETDANF VMTGTGGIVE IQGTAEGKPF SQEEFLTLLG LAQTGIAELV DLQKQAIAG