| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_0372 |
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| Symbol | thiD |
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| ID | 7387816 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 320529 |
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| End bp | 321386 |
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| Gene Length | 858 bp |
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| Protein Length | 285 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 643650042 |
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| Product | phosphomethylpyrimidine kinase |
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| Protein accession | YP_002548257 |
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| Protein GI | 222147300 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0351] Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase |
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| TIGRFAM ID | [TIGR00097] phosphomethylpyrimidine kinase |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.591258 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCGTTC AAACAAACGA TGAAACGCCT CTGCCTCGCA TCGCCAATGT CTTGTCGATT
GCCGGTTCCG ATCCGTCTGG CGGAGCGGGT ATTCAGGCGG ACCTGAAGGT ATTTTCGGCT
TTGGGTGTCT ATGGCATGGC GGCGCTGACG GCGCTGACGG CCCAGAATAC CCAAGGGGTG
GCAGCTGTCG AATTGCTGGA TCCCATGTTC GTCGCAAGAC AGGTTGAGAC GGTTTTTGCC
GATATCCGGG TCGATGCGGT GAAAATCGGC ATGCTGGCCA ATGCGGATAT CGTCGGCGCG
GTGGCCGCTG TGCTTTCAAG CCATCCGGCA GTGCCGGTTA TCCTTGATCC GGTCATGGTT
GCCAAGGGCG GGGCGGCGCT GCTGGATGAC AAGGCAGTTG GCGCGCTGGT CGGGCAGCTC
TTGCCGCGGG TCCGCCTGAT CACCCCCAAC CTGCCGGAGG CTGCCGCACT TCTGCGTGTG
GCCGAGGCCG TGGACCGCGA CGGCATGGAG GCACAGGCCA GGGCCTTGTT GGGACTGGGG
GCCAAGGCGG TGCTTTTGAA GGGTGGGCAT TTGCCCGGTA ACGAGAGCCC CGATCTGCTG
GTCACGCCAA CGCTGACCCT GTGGCTGGAG GGCAAAAGGA TTGCCACCGC CAACACTCAT
GGCACCGGTT GCTCGCTGTC CAGCGCGATT GCCGCCGAGC TTGCCAAGGC TGATGATAAT
AGGACAAACG AAGCGCTGGC GCACGCTGTT ACTGTGGCAA AGGCCTGGCT GGCTGGCGCT
GTTCGGTCGT CAGGGCAACT GACTGTTGGT TCCGGCCACG GGCCCGTTCA TCATTTTTAC
CAGACATGGC CGAAATAG
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| Protein sequence | MTVQTNDETP LPRIANVLSI AGSDPSGGAG IQADLKVFSA LGVYGMAALT ALTAQNTQGV
AAVELLDPMF VARQVETVFA DIRVDAVKIG MLANADIVGA VAAVLSSHPA VPVILDPVMV
AKGGAALLDD KAVGALVGQL LPRVRLITPN LPEAAALLRV AEAVDRDGME AQARALLGLG
AKAVLLKGGH LPGNESPDLL VTPTLTLWLE GKRIATANTH GTGCSLSSAI AAELAKADDN
RTNEALAHAV TVAKAWLAGA VRSSGQLTVG SGHGPVHHFY QTWPK
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