Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_0365 |
Symbol | rhtB |
ID | 7387809 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | - |
Start bp | 313603 |
End bp | 314220 |
Gene Length | 618 bp |
Protein Length | 205 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 643650035 |
Product | RhtB family transporter |
Protein accession | YP_002548250 |
Protein GI | 222147293 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1280] Putative threonine efflux protein |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGACCCTTG CCAGCCTGCT TGCCTATGCC GGAGCCCTGT TCATTGCCGC CGCCATTCCC GGCCCCGGCA TGACGGCGAT CGTGGCGCGG GCGCTTGGCT CCGGTTTTCG CCCGACCTTT TTCATGGGGC TGGGACTGAT TCTGGGTGAT CTCTGCTATC TGACCGCCGT CATTCTGGGC CTTGCCTATA TTGCCCAGAC CTTCGTGACG CCGTTCCTGA TCATCAAATT CGCAGGCACG CTCTACCTGG CTTATATCGC CTGGAAGCTC TGGACGGCAG GGCTTTTGCC GCAAAATATC GAAGCGCGCA AAAGTGTGGG CGTGATGGCA TCCTTCCTGT CCGGCCTGTT CGTGACGCTC GGCAACCCGA AGACCATGCT GTTCTACGTC GCCCTGGTGC CGACCCTCAT TCCGCTCGAG GCCATTGGCC CGGCGGATTA CGGGCTATTG GTCGGCACGA CATTCGTGGT GCTGATGGCC GTGCTCATTC CCTATATTCT TATGGCTGCC AAGGCGCGGC TGCTGCTGAA GCAGCCCTCC GCGTTGAAAC TGCTCAACCG GGCCGCCGCC AGCATTCTGG CCGGAACCGC CGCCTATATC GCCACAAAGG CGGCGTGA
|
Protein sequence | MTLASLLAYA GALFIAAAIP GPGMTAIVAR ALGSGFRPTF FMGLGLILGD LCYLTAVILG LAYIAQTFVT PFLIIKFAGT LYLAYIAWKL WTAGLLPQNI EARKSVGVMA SFLSGLFVTL GNPKTMLFYV ALVPTLIPLE AIGPADYGLL VGTTFVVLMA VLIPYILMAA KARLLLKQPS ALKLLNRAAA SILAGTAAYI ATKAA
|
| |