| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_0347 |
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| Symbol | pyrF |
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| ID | 7387795 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 299330 |
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| End bp | 300025 |
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| Gene Length | 696 bp |
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| Protein Length | 231 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 643650021 |
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| Product | orotidine 5'-phosphate decarboxylase |
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| Protein accession | YP_002548236 |
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| Protein GI | 222147279 |
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| COG category | [F] Nucleotide transport and metabolism |
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| COG ID | [COG0284] Orotidine-5'-phosphate decarboxylase |
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| TIGRFAM ID | [TIGR01740] orotidine 5'-phosphate decarboxylase, subfamily 1 |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.150562 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGATGCGC GCAATCGTTT GATCGTGGGG CTTGACGTCG CCACCGTCAC TGAGGCGGAA
AAACTGGTCT CGACGCTGGC CGAAGACGTG ACTTTCTACA AGATCGGCTA TCAACTGGCT
TTTGCAGGCG GGCTGGAATT TGCCCGAGAT CTCGCCCAAA GCGGCAAGAA GGTCTTTCTG
GATATGAAAC TGCTCGATAT CGACAATACC GTCGCCTCGG CAGTGGAGAA TATCGTCAGG
ATGGGCATGA CCATGCTGAC GCTGCATGCC TATCCGAAAG CCATGCAAGC CGCCGTGGAA
GCAGCCCAGG GATCGGGTCT CTGCCTGCTT GGCGTGACGG TCTTAACCTC GATGGATGAC
CAGGATCTCA ATGATGCCGG TTATCAAGGC GATGCCCGGT CGCTGGTTTT GAAGCGGGCC
GCCCAGGCAA AAGAAAAAGG CATGGGCGGT ATCGTCTGCT CGGCGCAGGA AGCGCAGGCT
GTGCGCGCCA TTCTCGGCTC CGACATGGCC ATTGTCACGC CCGGCATCCG CCCCGCTGGC
AGTGATGCCG GTGACCAGAA ACGGGTGATG ACGCCGGCAG ACGCCATCCA TGCCGGTTCC
AGCCATTTGG TTGTCGGCCG CCCGATCGTC AAGGCAGACG ATCCGAGAGC AGCAACCCAG
GTCATTCTCG CCGAAATGCA GGCCGCTTTC ACCTGA
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| Protein sequence | MDARNRLIVG LDVATVTEAE KLVSTLAEDV TFYKIGYQLA FAGGLEFARD LAQSGKKVFL
DMKLLDIDNT VASAVENIVR MGMTMLTLHA YPKAMQAAVE AAQGSGLCLL GVTVLTSMDD
QDLNDAGYQG DARSLVLKRA AQAKEKGMGG IVCSAQEAQA VRAILGSDMA IVTPGIRPAG
SDAGDQKRVM TPADAIHAGS SHLVVGRPIV KADDPRAATQ VILAEMQAAF T
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