| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_0299 |
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| Symbol | polA |
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| ID | 7387592 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 252729 |
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| End bp | 255707 |
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| Gene Length | 2979 bp |
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| Protein Length | 992 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 643649982 |
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| Product | DNA polymerase I |
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| Protein accession | YP_002548197 |
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| Protein GI | 222147240 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0258] 5'-3' exonuclease (including N-terminal domain of PolI)
[COG0749] DNA polymerase I - 3'-5' exonuclease and polymerase domains |
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| TIGRFAM ID | [TIGR00593] DNA polymerase I |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAAAG GCGATCATCT CTTTCTTGTC GACGGCTCCG GCTTCATCTT CCGGGCCTTC
CATGCGCTTC CGGCGCTGAC CCGCAAATCG GACGGGCTGC CGGTCGGCGC GGTCTCGGGC
TTTTGCAATA TGATGTGGAA GCTGCTGACC GAAGCACGCG ACACGTCAGT CGGCGTCACA
CCCACCCACC TTGCTGTGAT TTTCGACTAT TCGTCAAAAA CCTTCCGCAA GGATCTCTAT
CCCGAATACA AGGCCAATCG CTCCGCCCCG CCGGAAGATC TCGTGCCACA ATTCGGACTG
ATCCGCCAGG CGACGCGGGC CTTCAACCTG CCCTGCATCG AAACCGAAGG CTTCGAGGCC
GATGACATTA TCGCCACCTA TGCGCGGGCC GCCGAAGCCA TCGGAGCGGA TGTCACAATC
GTCTCTTCCG ACAAGGACCT GATGCAGTTG GTGACTGCCA ATGTCCATAT GTATGACAGC
ATGAAGGACA AGCAGATCGG CATTCCCGAT GTCATCGAGA AATGGGGTGT GCCGCCGGAA
AAGATGATCG ACCTGCAATC GCTGACCGGC GACAGCACCG ATAATATTCC CGGCATTCCC
GGCATCGGCC CGAAGACGGC GGCGCAATTG CTGGAGGAAT ATGGCGATCT GGACACGCTG
ATGGCTCGGG CCTCCGAAAT CAAGCAGAAC AAGCGGCGCG AAAACATTCT GGCAGGTGCC
GAACTGGTCA AGCTGTCGCG GCAATTGGTA ACGCTGCGCA CCGACGTGCC GCTGGACATG
CCGCTGGATG CGCTGATGCT GGAAAAGCAG GATGGACCAA AGCTGGTCGC CTTCCTGAAG
GCCATGGAAT TCACCTCGCT GACACGGCGC GTCGCCGACA ATTGCGATTG TGATGCTGGC
GCCATCGAGC CCGCCACGAT CTCGGTGGAA TGGGGTGCCT CGGCCCGTGG CCCGGATCTC
GATGCCGGTG CCGCAGCTCA AACGCCCGCC TCCGGCCAAG AAGCCGGACC CACGGCACAA
TCCGCCAAGG CCGAGGGCGC GACGCCTGCC GATCTTGCCG CGGCCCGGCA ATCGGCCTTT
GGTGGCCAGC CCATCGACCG ATCCGCCTAC GTGACCATTC GCGATCTTCC CACCCTGGAA
GGCTGGATTG CCGCGGCGCG GGAGGCCGGT TTTGTCGCCT TCGATACGGA AACCACCTCG
CTTGACCCGA TGCAGGCTGA TCTGGTCGGT GTGTCGCTGG CCCTTCAGGA TAATGCGGCC
TCGCCGGGCG CAGCAACCAT TCGCGCCGCC TATGTGCCGC TTGGCCACAA GACCGGGCGA
GATGACCTGT TCAGCGACGG CCTGAAACTG GCGGAAAACC AGATCCCGAT GGATGCGGCG
CTTACCGCCT TGAAGGGCCT ACTGGAAGAT GCTTCGGTTC TAAAAGTGGC GCAGAACCTG
AAATACGATT ACCTTGTCAT GAAGCGGCAC GGCATTGTTA TCAGGGGCTT CGACGATACG
ATGCTGCTGT CCTATGTGCT GGAAGCTGGC GTCGGCGCGC ATGGCATGGA CAGCCTGTCG
GAGCGGTGGC TCGGACATAC GCCCATCCCC TATAAGGAGG TCGCTGGCTC CGGCAAATCG
CTTGTCACCT TCGATCTCGT CGATATCGAC AAGGCCACCG CCTACGCCGC AGAAGATGCG
GACGTCACGC TGCGTCTCTG GCTGGTGCTG AAACCACGGC TTGCCGCCGT CGGTCTGGCC
CGCGTCTATG AGCGGCTGGA ACGGCCCCTG GTGCCGGTTC TGGCTGATAT GGAAGAGCGC
GGCATTACCA TCGACCGACA GATCCTCTCG CGGCTGTCTG GCGAGTTGGC ACAGAAGGCC
GCCGCCTTTG AGGATGAAAT TTACGAATTG GCTGGCGAGC GCTTCAATGT CGGCTCGCCC
AAACAGCTGG GCGATATCCT GTTTGGCAGA ATGAACCTGC CCGGCGGCTC AAAAACCAAG
ACCGGCCAAT GGTCGACGTC CGCGCAGGTG CTGGAAGATC TGGCCGCCCA GGGTGAGCCC
CTGCCCCGCA AGATCGTCGA TTGGCGCCAG CTGACCAAGC TGAAATCCAC CTATACCGAC
GCCCTGCCCG GCTATGTCCA CCCGCAGACC AAGCGGGTCC ACACATCCTA TTCGATGGCG
GCCACCACCA CCGGTCGCCT GTCGTCATCC GAGCCGAACC TGCAAAATAT TCCGGTGCGC
ACGGCAGAAG GCCGCAAGAT CCGCACCGCC TTCATTTCCA CCCCAGGCCA TAAGCTACTG
TCTGCCGACT ATAGCCAGAT CGAGCTCAGG GTACTGGCGC ATGTGGCGGA TATTCCGCAA
TTGCGTCAGG CCTTTGCCGA TGGGGTCGAT ATTCATGCGA TGACGGCCTC TGAAATGTTC
GGCGTGCCTG TGGATGGCAT GCCGTCTGAA GTCCGCCGCC GCGCCAAGGC GATCAATTTC
GGAATCATCT ACGGTATTTC CGCCTTCGGT CTTGCCAACC AGCTCAGCAT TGAGCGGGCG
GAAGCGGGCG AATACATCAA GAAATATTTC GAGCGCTTCC CCGGCATCAA GGACTATATG
GAAAGCACCA AGGCTTTCGT GCGTGAGCAT GGCTATGTGG AAACCATTTT CGGACGGCGC
GCCCATTACC CGGAGATCAA ATCCTCAAAC CCGTCAATGC GGGCCTTCAA CGAGCGGGCA
GCCATCAACG CGCCGATCCA GGGTTCCGCC GCCGATGTCA TCCGCCGCGC CATGGTGCAG
GTGGAACCGG CGCTGGCCAA GGCCGGGCTT GGCGAGAAAA CCCGGATGTT GCTCCAGGTG
CATGACGAAC TGATCTTCGA AGTCGAGGAT GAGGCCATCG AGGCTGCCTT GCCGGTGATC
GTCTCCACCA TGGAAAATGC CGCCATGCCC GCCATCGCCA TGCGCGTCCC ACTCAAAGTC
GATGCCCGCG CCGCCGATAA TTGGGACGAA GCGCATTGA
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| Protein sequence | MKKGDHLFLV DGSGFIFRAF HALPALTRKS DGLPVGAVSG FCNMMWKLLT EARDTSVGVT
PTHLAVIFDY SSKTFRKDLY PEYKANRSAP PEDLVPQFGL IRQATRAFNL PCIETEGFEA
DDIIATYARA AEAIGADVTI VSSDKDLMQL VTANVHMYDS MKDKQIGIPD VIEKWGVPPE
KMIDLQSLTG DSTDNIPGIP GIGPKTAAQL LEEYGDLDTL MARASEIKQN KRRENILAGA
ELVKLSRQLV TLRTDVPLDM PLDALMLEKQ DGPKLVAFLK AMEFTSLTRR VADNCDCDAG
AIEPATISVE WGASARGPDL DAGAAAQTPA SGQEAGPTAQ SAKAEGATPA DLAAARQSAF
GGQPIDRSAY VTIRDLPTLE GWIAAAREAG FVAFDTETTS LDPMQADLVG VSLALQDNAA
SPGAATIRAA YVPLGHKTGR DDLFSDGLKL AENQIPMDAA LTALKGLLED ASVLKVAQNL
KYDYLVMKRH GIVIRGFDDT MLLSYVLEAG VGAHGMDSLS ERWLGHTPIP YKEVAGSGKS
LVTFDLVDID KATAYAAEDA DVTLRLWLVL KPRLAAVGLA RVYERLERPL VPVLADMEER
GITIDRQILS RLSGELAQKA AAFEDEIYEL AGERFNVGSP KQLGDILFGR MNLPGGSKTK
TGQWSTSAQV LEDLAAQGEP LPRKIVDWRQ LTKLKSTYTD ALPGYVHPQT KRVHTSYSMA
ATTTGRLSSS EPNLQNIPVR TAEGRKIRTA FISTPGHKLL SADYSQIELR VLAHVADIPQ
LRQAFADGVD IHAMTASEMF GVPVDGMPSE VRRRAKAINF GIIYGISAFG LANQLSIERA
EAGEYIKKYF ERFPGIKDYM ESTKAFVREH GYVETIFGRR AHYPEIKSSN PSMRAFNERA
AINAPIQGSA ADVIRRAMVQ VEPALAKAGL GEKTRMLLQV HDELIFEVED EAIEAALPVI
VSTMENAAMP AIAMRVPLKV DARAADNWDE AH
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