| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_0229 |
|---|
| Symbol | deoB |
|---|
| ID | 7387542 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | + |
|---|
| Start bp | 201958 |
|---|
| End bp | 203178 |
|---|
| Gene Length | 1221 bp |
|---|
| Protein Length | 406 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 643649931 |
|---|
| Product | phosphopentomutase |
|---|
| Protein accession | YP_002548147 |
|---|
| Protein GI | 222147190 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1015] Phosphopentomutase |
|---|
| TIGRFAM ID | [TIGR01696] phosphopentomutase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.44638 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCGCGGG CCTTTCTGTT TGTTCTCGAT TCCTTTGGTG TCGGCGGCGC GCCGGATGCG
CCAGCCTATG GCGATGACGG CGCCGATACG CTAGGCCATA TCGCCGAGTT CTGCGCCGCC
GGTGCCGGGG ATCGCGATGG TTTGCGGGCC GGGCCGCTGA TGTTGCCGAA CCTATCGGCG
TTGGGCTTGT TGCAGATTGC CAGCTTGGCC AGCGGTAGCT TGCCTGCGGG CATGGCCTTG
CCGGAGCGGG TCTTTGGTCT GTACGGTGCG GCCAATGAAA TTTCCCGGGG CAAGGATACA
CCGTCTGGCC ATTGGGAAAT CGCTGGTACA CCTGTCATGT TCGACTGGGG TTATTTCCCG
CAAGAAGGCG ATGCCTTTCC CGCCGATCTC GTCGCTGATA TTTGCAAACG CGCCGATCTT
CCCGGCATTC TCGGTAATTG TCATGCCTCT GGCACCGACA TCCTGGCCCG ATTGGGTGAA
GAACATTGCC GCACGGGCCA GCCGATCTGC TATACATCCT CCGATAGCGT CTTCCAGATT
GCCGCCCATG AGCATGTGTT CGGGTTGGAG CGTTTACTGC GGCTCTGCGA AATCGTCCGG
GAATTGCTCA CCCCCTACAG GATCGGTCGG GTGATCGCCC GACCCTTTAT CGGCAATAGC
GCTTCGAATT TCCAACGCAC CGGCAATCGG AGGGATTATT CGGTTCCGCC GCCGGAGCCG
ACTTTGCTCG ATCGGCTGAG TGAAGCGGGT CGCACGGTAC ATGCCATCGG CAAGATCGGC
GATATCTTCG CCCATCAGGG GACTGGCCGC GACATCAAGG CGAATGGCAA TGCCGCACTG
ATGGAGGCGA CGCTGGCAGT GATGGATGAG GCAGCGGACG GCGATCTGGT CTTCACCAAT
TTTGTTGATT TCGACATGCT TTACGGCCAT CGCCGCGATG TGCCGGGCTA TGCCGCAGCG
CTAGAAGCCT TCGATCTCTG GCTGCCGGAT GTCTATCGCA AGCTTATCCC CGGCGACATG
GTGATTCTGA CCGCCGATCA TGGCTGTGAT CCGACCTGGC GCGGCACCGA CCATACCCGT
GAGCGGGTGC CGATCATGGC GTTCGGTCCC GGCATTCGGG CGCGTTCTAT CGGCATTCGC
GACACCTATG CCGATATCGG TGAGACAATT GCGGCCCATC TCGGTATTGC TCCGGGCCGT
CATGGCATGA GTTTCCTATG A
|
|---|
| Protein sequence | MARAFLFVLD SFGVGGAPDA PAYGDDGADT LGHIAEFCAA GAGDRDGLRA GPLMLPNLSA
LGLLQIASLA SGSLPAGMAL PERVFGLYGA ANEISRGKDT PSGHWEIAGT PVMFDWGYFP
QEGDAFPADL VADICKRADL PGILGNCHAS GTDILARLGE EHCRTGQPIC YTSSDSVFQI
AAHEHVFGLE RLLRLCEIVR ELLTPYRIGR VIARPFIGNS ASNFQRTGNR RDYSVPPPEP
TLLDRLSEAG RTVHAIGKIG DIFAHQGTGR DIKANGNAAL MEATLAVMDE AADGDLVFTN
FVDFDMLYGH RRDVPGYAAA LEAFDLWLPD VYRKLIPGDM VILTADHGCD PTWRGTDHTR
ERVPIMAFGP GIRARSIGIR DTYADIGETI AAHLGIAPGR HGMSFL
|
|---|
| |