| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_0218 |
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| Symbol | ctpC |
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| ID | 7387535 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 197355 |
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| End bp | 198164 |
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| Gene Length | 810 bp |
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| Protein Length | 269 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 643649924 |
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| Product | component of type IV pilus |
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| Protein accession | YP_002548140 |
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| Protein GI | 222147183 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3745] Flp pilus assembly protein CpaB |
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| TIGRFAM ID | [TIGR03177] Flp pilus assembly protein CpaB |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGCCCG CCCGCATTCT CATTCTCTTC GTCGCCGTGG CCGCGGCCGG TCTGGCCGGT
CTGTTGGCCA TGGGACTGAG CGGGCAAAAG CGCGTGGTGG TGCAGCAATC CGAGCCTGTG
GTGACGAAGG AACCGACCAC CAAGGTGCTG ATCGCCGCTG CCAGCCTGCC GGTCGGCGCC
CGCCTGACCG ATAAGGCAAT GCGCTGGATG GACTGGCCGA AGACCGATTT GGTCGACGGT
TTCGTGACGG AGGAGAACCG TCCCCAGGCC TTGAGCGACC TTGCCGGGCT TGTCGTGCGG
CTGCCGATTT TCGAAGGTGA GCCGATCCGG ATCGAAAAGA TCGCCGACGC CTCCAGCCGC
ACCCTTTCAG CGCTGCTTCC AGCCGGAAAG CGGGCAATCT CCACGGAAAT TTCCGTGGCA
ACCGGTGCTG GCGGTTTCAT CCTGCCCAAT GACCGTGTTG ACGTGATCAT GGTCCGCAAG
GGCGATAATG ACAATCACCT GACCGAAACC GTGCTGTCCA ATGTCCGCGT TCTCGCCATC
GACCAGCAGA TCGAGGAAAA GAACGACGGC ACCCGTTCGG TCATTGGCAC CACCGCAACA
CTGGAACTGA CACCGGAGCA AACCAAGGTG CTGACGGTTG CCCAGCAGAT GGCCGAGCGC
CTGTCACTGG CGCTGCGCTC CGTGGCGGAT GCCCAGGAGC AGGACAATAG TTCCGCAAGC
TACCTGCTGA GCGGCGATAG CGGCGGTCCA CAGGTGCAGG TCATCAAATC CGGGCAGATC
GTCAAGAGCG CGGGAGCTGC AAAACAATGA
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| Protein sequence | MKPARILILF VAVAAAGLAG LLAMGLSGQK RVVVQQSEPV VTKEPTTKVL IAAASLPVGA
RLTDKAMRWM DWPKTDLVDG FVTEENRPQA LSDLAGLVVR LPIFEGEPIR IEKIADASSR
TLSALLPAGK RAISTEISVA TGAGGFILPN DRVDVIMVRK GDNDNHLTET VLSNVRVLAI
DQQIEEKNDG TRSVIGTTAT LELTPEQTKV LTVAQQMAER LSLALRSVAD AQEQDNSSAS
YLLSGDSGGP QVQVIKSGQI VKSAGAAKQ
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